Polyodon spathula (Mississippi paddlefish): 121330829
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Entry
121330829 CDS
T07273
Name
(RefSeq) sodium- and chloride-dependent glycine transporter 1-like isoform X1
KO
K05038
solute carrier family 6 (neurotransmitter transporter, glycine) member 5/9
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
121330829
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pspa02000
]
121330829
Transporters [BR:
pspa02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
121330829
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GFIT
Motif
Pfam:
SNF
TMEM208_SND2
Motif
Other DBs
NCBI-GeneID:
121330829
NCBI-ProteinID:
XP_041133599
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Position
18:complement(28642572..28689971)
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AA seq
642 aa
AA seq
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MSESNTNVHLSSDRNGEVLGETAKKDENVRRGNWGNQIEFVLTSVGYAVGLGNVWRFPYL
CYRNGGGAFMFPYFIMLVFCGIPLFFLELSFGQFASLGCLGVWKVSPMFKGVGYGMMVVS
TYIGIYYNVVICIAFYYFFMSMTDVLPWTYCNNPWNTKDCSGVLGSSYANASIANTSTLM
GNISELVNHTAKRTSPSEEYWKYQVLNISDDIGNFGEVRLPILGCLAASWVVVFLCLIKG
VKSSGKVVYFTATFPYVVLTILFIRGITLDGAVNGIKYYLTPQWKMILDAKVWGDAASQI
FYSLGCAWGGLITMASYNKFHNNCYRDSIIISITNCATSVYAGFVIFSILGFMAHHLGVD
VADVADHGPGLAFVAYPGALTLLPISPLWSLLFFFMLILLGLGTQFCLLETLVTAIVDEI
GTDWIIRNKTYVTLGVAVVGFLLGVPLTSQAGIYWLLLMDNYAASFSLVIISCIMCVSIM
YIYGFRKYFKDVEMMLGFPPPIFFRICWRFVSPAIITFILVFTVVQYKPITYNDYIYPGW
SLAIGFLMALSSVICIPIYAIYKIWTSEGRTFLERVKNALKPDPSWGPALQEHRTGRYAP
NVSSGSDLNQEDQLLHVKEKPEEVSLMIQDSNGSAHNPEASA
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaatccaacactaatgtacatttgtcttctgatcggaatggagaggttcttggt
gagacggcaaagaaggatgagaacgtacgccggggaaactggggtaaccagattgagttt
gttctgaccagtgtcggctatgcagtgggtctgggtaatgtctggagattcccctatctc
tgctacagaaatggaggaggtgccttcatgttcccctacttcatcatgcttgtgttctgt
ggaatccccctctttttcttggagctgtcctttggacagtttgccagtcttggctgcctt
ggggtatggaaagtcagccccatgtttaaaggtgttggctatggtatgatggtggtttcc
acgtatatcggtatttattacaacgtggtgatctgcatcgctttctattacttcttcatg
tctatgaccgacgtgcttccttggacatactgcaataacccctggaacaccaaggactgc
agtggggtgttggggtcttcctatgcgaacgcttctatcgccaacacgtccacgttgatg
ggaaacatctcagaattggtgaaccatacagccaagaggaccagccctagcgaggagtac
tggaagtaccaggtgctgaacatctctgatgacattggtaattttggagaggtgcggctt
ccaatattgggttgcctggcagcctcctgggtcgtggtgttcctctgtctcatcaaaggg
gtcaagtcgtcagggaaagtggtttactttacagccacatttccttacgtggtgctgaca
atcctcttcatccgaggaattacattggatggtgctgttaatgggatcaagtactacctg
actccgcagtggaaaatgatcttggatgcaaaggtgtggggggatgctgcctcccagatc
ttctactctcttggctgtgcctggggtgggctcatcaccatggcatcttataacaaattc
cacaacaactgttacagggacagcataatcatcagcataacaaactgtgcaaccagcgtc
tacgcaggctttgtcatcttctccattctgggcttcatggcgcaccacctgggtgtggat
gtggccgatgtggccgaccacggacctgggctagcttttgtggcctacccaggggccctc
actctgctccccatttccccactttggtcactccttttcttcttcatgctcatcctgcta
ggacttggaactcagttctgcttgttggagacactggtaacagctattgtggatgagatt
gggacagactggataattcggaataaaacatatgtgaccttgggggtggcagtagttggc
tttctgctaggagtgcctctgacatcccaggctgggatctattggctgctgctcatggat
aactatgcagccagtttctctcttgtcatcatctcctgcatcatgtgtgtctccatcatg
tacatttacgggttccgcaagtacttcaaggatgttgagatgatgctgggttttcctccc
ccaatcttcttccgaatctgctggcgattcgtgtctcctgccatcatcacgtttatcctg
gtgttcacagtagtccaatacaaacctattacttacaatgactacatctaccctggctgg
tctttagccatcggattcctaatggctctctcttcagtaatttgcattcctatctatgcc
atttacaagatctggacatctgaagggagaacgtttctagagcgtgtaaaaaacgcatta
aagccagaccccagctggggcccagccctgcaggagcaccggactggtcgctatgcaccg
aacgtcagctcaggctcagacctcaaccaggaggatcagctcctgcacgttaaggagaag
ccagaagaggttagcctcatgatccaggacagcaatggctctgcacacaacccggaggcc
agcgcgtaa
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