Polyodon spathula (Mississippi paddlefish): 121330930
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Entry
121330930 CDS
T07273
Name
(RefSeq) E3 ubiquitin-protein ligase SMURF1 isoform X1
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04120
Ubiquitin mediated proteolysis
pspa04137
Mitophagy - animal
pspa04144
Endocytosis
pspa04340
Hedgehog signaling pathway
pspa04350
TGF-beta signaling pathway
pspa04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121330930
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
121330930
04350 TGF-beta signaling pathway
121330930
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121330930
04137 Mitophagy - animal
121330930
09144 Cellular community - eukaryotes
04520 Adherens junction
121330930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121330930
04121 Ubiquitin system [BR:
pspa04121
]
121330930
03029 Mitochondrial biogenesis [BR:
pspa03029
]
121330930
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
121330930
Membrane trafficking [BR:
pspa04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
121330930
Autophagy
Mitophagy
Other mitophagy associated proteins
121330930
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
HECT type E3
121330930
Mitochondrial biogenesis [BR:
pspa03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
121330930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
C2
DUF7350
Motif
Other DBs
NCBI-GeneID:
121330930
NCBI-ProteinID:
XP_041133849
LinkDB
All DBs
Position
18:complement(2435233..2456632)
Genome browser
AA seq
742 aa
AA seq
DB search
MSNPGTRRNGSSIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKSTLDP
KWNQHYDLYIGKTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCK
LNPTDSDAVRGQIVVSLQTRDRIGTGGAVVDCRGLLENEGPVFEDSGPGRPLSCFMEEPL
PYTDSTGAAGGGNCRFLESPNQEQRLQAQRLRNQDTRGHAHTPQNRPHGSQSPDLPEGYE
QRTTVQGQVYFLHTQTGVSTWHDPRIPRVNNGLQWYFRRDLNSVSCEDLGPLPPGWEVRS
TVSGRIYFVDHNNRTTQFTDPRLHHIMSQHSQVKESGQQLPVQTEVPPEDGEGELPVRYE
RDLVQKLKLLRHELSLQQPQAGHCRIEVSREEIFEESYRQIMKMRHKDLKKRLMVKFRGE
EGLDYGGVAREWLYLLCHEMLNPYYGLFQYSTDNIYTLQINPDSSINPDHLSYFHFVGRI
MGLAVFHGHYINGGFTLPFYKQLLGKPIQLSDLETVDPELHKSLVWILENDITPVLDHTF
CVEHNAFGKFLQHELKPNGRNIPVTEENKKEYVRLYVNWRFMRGIEAQFLALQKGFNELI
PQHLLKPFEHKELELIIGGLGKLDLNDWKANTRLKHCVADSNMVKWFWQAVESFDEERRG
RLLQFVTGSTRVPLQGFKALQGSTGSAGPRLFTIHLIDANTDNLPKAHTCFNRIDIPPYE
TYEKLYEKLLTAVEETCGFAVE
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatcctggcacacgaaggaacgggtcgagcatcaaaatccgtctgacagtatta
tgtgccaagaacctggcaaaaaaggatttcttcaggttacctgacccttttgccaaaata
gtagtagatggatcaggtcagtgccattcaacagacacagtgaagagcacactggaccca
aagtggaaccagcactatgatctatatattggaaaaacagactcgatcaccatcagtgta
tggaatcacaagaaaatccacaagaaacagggagctggcttcctgggctgtgtgagactc
ttatccaatgcgatcagcaggctaaaggacactggctaccagcgtttggatctatgcaaa
ttaaaccccactgacagcgatgcagtacgtggccaaatagtagtaagtttacagactcgg
gacaggataggcactggaggagctgttgtagactgtagaggacttctagaaaatgaaggc
ccagtttttgaagactcggggcccggaagaccgcttagctgtttcatggaggagccgtta
ccatacacagacagcactggagccgcagggggagggaactgccgcttcctggaatcgccc
aatcaggagcagaggcttcaggcacaacgcctccgaaatcaagacaccagaggtcacgca
cacacccctcagaaccggccacacgggagccaatcccccgacctgcctgagggttacgaa
caaaggacgacagtacagggccaggtttactttctacatacacagactggagtcagtacc
tggcacgacccaagaataccaagggttaataacggtttgcaatggtatttccgcagggac
ctcaacagtgtcagctgcgaagatttaggtcctctgcctccagggtgggaggtcagaagt
acagtttcgggaaggatatattttgtggaccacaataacagaacaacacaattcacagac
ccaagattacaccacataatgagtcagcattctcaggtaaaggaatccggccagcagctg
cctgtgcagactgaggttcctccagaggatggagaaggagagctccctgtacgctatgag
agggacttggtgcagaaactgaaattgctaaggcatgagctctcattgcagcagccacaa
gccggtcactgtcgcattgaggtatccagggaggaaatttttgaggagtcttatagacag
atcatgaagatgcggcacaaagacctgaagaaaagactgatggtgaagttccggggagaa
gaaggactggactatggtggggtggcaagggagtggttgtatctcctgtgtcatgaaatg
ctaaatccgtattatggactgttccagtattccacggataacatttacacgctgcaaata
aatccggactcctctattaatccggatcatttgtcatatttccactttgttgggcggata
atgggcctggctgttttccacggacactacattaatggaggttttacactgcctttctat
aagcagctgctgggtaaacccatacagctgtctgacctggaaactgtggatccggagtta
cacaaaagcttagtgtggattcttgagaatgacatcaccccagtactggatcatactttt
tgtgtagagcataatgcatttggtaaatttctccaacatgaactcaaaccaaacggaaga
aacattccggtaactgaggagaacaagaaggaatatgtaagattatacgtgaactggagg
tttatgagagggattgaggctcagtttctagccttgcaaaaaggatttaacgagttgatt
ccacagcatttgttaaagccctttgaacacaaggaactagagctaatcatcggaggcctg
ggtaagctagatctcaacgactggaaggccaatacccggctgaagcactgtgtggctgac
agcaacatggtcaagtggttctggcaggcagtggagtcgtttgatgaggagaggagaggg
aggctgctgcagttcgttacaggctccacccgcgtcccgctgcaggggttcaaagcactg
caaggttctacaggttccgcaggacccagactcttcactatccatctgatcgatgccaac
acagacaacctgcctaaagcccacacttgctttaatcggattgacattccgccgtatgaa
acttatgaaaagctgtacgagaaacttctgactgccgtggaggagacctgcggctttgcc
gtagagtga
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