Polyodon spathula (Mississippi paddlefish): 121330998
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Entry
121330998 CDS
T07273
Name
(RefSeq) GATOR complex protein WDR24-like isoform X1
KO
K20408
SEA/GATOR complex protein SEA2/WDR24
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04150 mTOR signaling pathway
121330998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121330998
Membrane trafficking [BR:
pspa04131
]
Autophagy
Other autophagy associated proteins
SEACAT/GATOR2 complex
121330998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
WD40
WDR55
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
MIOS_WD40
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_IFT140_1st
zf-RING_16
Beta-prop_WDR35_TULP_N
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
121330998
NCBI-ProteinID:
XP_041134014
LinkDB
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Position
18:complement(1154188..1162592)
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AA seq
825 aa
AA seq
DB search
MVKLLLAHQKAKAVGPQDSEDQATRGHSYQCSLQQKMEKMARVTTALGSNTISGCTMFCH
LDAPANAISVCRDAAQVVVAGRNIFKIYALEEEQFVEKLNLRVGRKPSLNFSCADVMWHQ
MDENLLATAATNGAVVTWNLGKPSRNKQDQLFTEHKRTVNKVCFHPTEVYMLLSGSQDGY
MKCFDLRKKGSASTFSGQSESVRDVQFSIRDYFTFAASFENGNVQLWDIRRPDRYERMFT
AHNGPVFCCDWHPEDRGWLATGGRDKMVKVWDITTNRAKEIHCVQTIASVARVKWRPERK
YHLATCSMMVDHNIYVWDVRRPFIPFATFEEHKDVTTGIVWRHLHDPGFLLSGSKDSTLY
QHKFKDASRPVDKANPEGLCFGLFGDLAFAAKESLISGGGDSNRKPYGGGGDRRYPIFFF
KKPDLTEQFAHVSSALSVFETDLESSRMDWFVKTARRYLLSGKPFGELCDHNAKVAKELN
RPQVATTWTMLRIMYSDPGSLTTATGISKGGSIPLMNSFNMKEIAAGGLGSEGRLDRAKG
ETRQDSTHLDPGNSLLNNNDENEETEGSEGPADYLFGDAELEDDDLYPMENENATAEEAE
YILPQEAFPLRHEIMDNPSVPEHLQDKVDSPHVSGNEAETVCLTPIKSFSLISISQPLYE
SHLPASFFSPVVREMLQHYAEAGDVQMAVSVLIVLGDRIRKEVDEVTQEHWYTSYIDLLQ
RFKLWNVSNEVIKLSTSSAINCLNQTSTTLHINCSNCKRPMSNKGWICDRCHQCASICAV
CHHVVKGLFVWCQGCSHGGHLEHIMNWLKSSSHCPAGCGHLCEYT
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atggtaaagctacttcttgcccatcagaaggccaaggctgttgggccccaggactcggaa
gaccaggccacaagggggcacagctaccagtgtagtctacagcagaaaatggaaaagatg
gcgcgtgtgaccacggctctgggcagcaacaccatcagtgggtgcaccatgttctgccac
ctggacgcccccgcgaatgccatcagcgtgtgccgtgacgccgcgcaggtggtggtggcc
ggccgaaacatcttcaagatctatgccttggaggaggagcagttcgtggagaagctaaac
ctgcgcgtgggccgcaagccctccctcaacttcagctgcgccgatgtcatgtggcatcag
atggacgagaacctgctggccacagcggccaccaacggcgcggtggtcacgtggaacctg
ggcaaaccatcccgcaacaagcaggaccagctgttcacggagcacaagcggactgtcaac
aaggtctgcttccaccccactgaggtgtacatgctgctgagcggctcgcaggatggctac
atgaagtgcttcgacctgcgcaagaaggggtcagccagcaccttttcagggcagtccgaa
agtgtgagggacgtgcagttcagcatccgggattacttcactttcgctgcatcctttgag
aacgggaacgtgcagctgtgggatattcggcgccctgatcgatatgagaggatgttcacc
gcgcacaacgggccggtcttctgctgtgactggcaccctgaggaccggggctggctggca
acagggggccgtgacaagatggttaaagtgtgggacataacgacgaaccgcgccaaggag
atccactgcgtgcagaccatcgcctcggtggcgcgggtgaagtggcggccggagcgcaag
taccacctggccacctgctccatgatggtggaccacaacatctacgtgtgggacgtgcgc
cggccgttcatccccttcgccaccttcgaggagcacaaggatgtcaccacgggcatcgtg
tggcgccacctccacgaccccggcttcctgctctcaggctccaaggacagtaccctctac
cagcacaagttcaaggacgccagccggcccgtggacaaggccaacccagaggggctgtgc
ttcgggctgttcggggacttggccttcgcggccaaggagagtctgatcagcggcggtggt
gactccaaccgcaaaccgtacgggggcgggggcgaccggcgctaccccatcttcttcttc
aagaagcccgacctcactgagcagttcgcccacgtgtcgagcgcgctcagcgtcttcgag
actgacctggagagcagccgcatggactggttcgtcaagaccgcccgccgctacctgctg
agcggcaagcccttcggggagctgtgcgaccacaacgccaaggtagccaaggagctcaat
cgaccccaggtagcgacaacctggactatgctgaggattatgtattcagatccagggagc
ctcactacagccacaggcattagcaaagggggatctatacctctcatgaacagcttcaat
atgaaggagattgcagcaggcggtctggggagcgagggcaggctggatcgggcaaaaggg
gagactcggcaggacagcacccacctggacccaggaaactccctactcaacaacaacgac
gagaatgaggaaacggagggcagtgagggtccggcagattacctctttggagacgcggag
ctagaggacgatgacctatacccgatggagaacgagaacgcgacggcggaggaggcagag
tacatcctgccccaggaggcgttccctctgcgccacgagatcatggacaacccctccgtg
ccagagcacctgcaggacaaggtggactcgccccacgtgagcggcaacgaggcggagacg
gtgtgcctgacccccatcaagtccttctccctcatctccatctcccagcccctgtatgag
agccacctgccggccagcttcttcagccccgtggtgcgtgagatgctacagcactacgcc
gaggccggcgacgtgcagatggccgtgtccgtgctcatcgtcctgggagaccgcatccgc
aaggaggtggacgaggtcactcaggagcactggtacacgtcgtacattgatctcctgcag
cgcttcaagctgtggaacgtctccaacgaggtgatcaagctcagcaccagtagtgccatc
aactgcctcaaccagacctccaccaccctccacatcaactgcagcaactgcaagcgaccc
atgagcaacaagggctggatctgcgacaggtgtcaccagtgtgccagtatctgcgccgtg
tgtcaccacgtggtgaaggggctctttgtctggtgccagggctgcagccatggggggcac
ctggagcacatcatgaactggctgaagagcagctcacactgcccggccggctgcgggcac
ctgtgtgaatacacctga
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