Polyodon spathula (Mississippi paddlefish): 121331011
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Entry
121331011 CDS
T07273
Name
(RefSeq) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121331011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121331011
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
121331011
Prokaryotic type
Archaeal type
TFB
121331011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
Cyclin_C
RB_B
KIF9
BRF2-like_C_cyclin_rpt
Sigma70_r4
Motif
Other DBs
NCBI-GeneID:
121331011
NCBI-ProteinID:
XP_041134039
LinkDB
All DBs
Position
18:31796491..31806409
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AA seq
318 aa
AA seq
DB search
MASTSRGDALALPKVQCPSHPDALLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSND
KAAKDPSRVGDAQNSLLNGGDLSTMISKGTGSASFDEFGNSKYQNRRTMSSSDRAMLNAF
KEITNMSDRINLPRNIIDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFK
EICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPKQVQMAATYIARK
AVELDLVPGRSPISVAAAAIYMASQASAEKKTQKEIGDIAGVADVTIRQSYRLIYPRAAD
LFPPDFKFDTPVDKLPQL
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgacaagccgtggtgatgccctagcccttcccaaagtgcaatgtccaagccat
ccagatgcactcttggttgaagactaccgagctggagatatgatctgcccagaatgtgga
ctggtggttggtgacagagttattgatgttggatcagaatggagaacttttagcaacgac
aaagcagctaaagatccctctcgagttggtgatgcccaaaactcacttttaaatggggga
gatttgagtacaatgatcagcaagggaaccggttcagcaagttttgatgagtttggcaac
tcaaagtaccagaaccgcaggactatgagcagctctgacagagcgatgttaaacgcattt
aaggaaatcaccaacatgtcggacagaataaacctccccagaaatatcatagatcgcaca
aataacttatttaagcaagtatatgagcagaagagcctgaagggaagaagtaatgatgca
attgcttctgcttgcctttatattgcctgcagacaagagggtgttccgcggacatttaaa
gagatttgtgcagtctccagaatttctaaaaaagaaattggccgatgtttcaagctgatc
ctgaaggcgcttgagacaagcgtggacttgataacaactggagacttcatgtccagattc
tgctccaacctggggttgcccaagcaagtacaaatggctgctacctatattgcaagaaag
gctgttgagctcgatctggtacctggcaggagccctatctctgttgcagcagcagccatc
tacatggcttcacaggcctcagcagagaagaagactcagaaagaaattggggacattgca
ggtgttgctgacgtcacaatcaggcagtcgtatagactcatctatcctcgagctgcagat
ctctttccaccagactttaaatttgacacccctgttgataaacttccccagctgtaa
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