Polyodon spathula (Mississippi paddlefish): 121331039
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Entry
121331039 CDS
T07273
Name
(RefSeq) eukaryotic translation initiation factor 3 subunit B
KO
K03253
translation initiation factor 3 subunit B
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121331039
03012 Translation factors [BR:
pspa03012
]
121331039
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
121331039
Translation factors [BR:
pspa03012
]
Eukaryotic type
Initiation factors
eIF-3
121331039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
eIF2A
RRM_1
Nup35_RRM
Motif
Other DBs
NCBI-GeneID:
121331039
NCBI-ProteinID:
XP_041134084
LinkDB
All DBs
Position
18:2950321..2957823
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AA seq
682 aa
AA seq
DB search
MRDIDNMPAEAEFDEDEEPSFSDPEDFVDDITDEELLGDLLKEKPQEADGIDSVVVVDNV
PQVGAERLEKLKNVIHKIFSKFGKITNEFYPEGEGKTKGYIFLEYSCPAHALEAVKNADG
YKLDKQHTFRVNIFTDFDKYMNISDEWETPEKQPFKDFGNLRHWLEDADCRDQYSVIFES
GERTGIFANDAKEPIVVEERARWTETYVRWSPRGTYLATFHQRGIALWGGEKFKQIQRFS
HQGVQLIDFSPCERYLVTFSPLMDTKDDPQAIIIWDVLTGQKKRGFHCESSAHWPIFKWS
HDGKFFARMTQDTLSIYETPSMGLLDKKSLKISGIKDFSWSPGDNIIAFWVPEDKDIPAR
VTLMQLPSRQEIRVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGMVTNFEIFRMREK
QVPVDVVEMKEGIIAFAWEPNGSKFAVLHGESPRINSSFYHVKNNGKIELIKTFDKQQAN
SIFWSPQGQFLVLAGLRSMNGALAFVDTSDCTMMNIAEHYMASDVEWDPTGRYVVTSVSW
WSHKVDNAFWLWTFQGRLLQKNNKDRFCQLLWRPRPPTLLDVEQIKLIKKDLKKYSKIFE
QKDRLSQSKASKELVDRRRTMIEEYHAYRENAQKIYQEQRVLRLDLRGGVDTDELDSNVE
DWEEETIEFFVNEEIIPLGEQA
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgcgggatatagataatatgccggcagaagccgaatttgatgaggacgaagaaccctct
ttcagcgatcccgaggatttcgtggatgacattactgatgaggagctgctgggtgatctg
ctgaaggagaaaccccaggaggccgatgggattgactctgttgttgttgttgacaacgtt
cctcaggtcggagccgaacgtcttgagaaactaaaaaatgttatccacaagatcttctca
aagtttggcaaaatcacaaacgaattttatccagagggagaagggaagacaaaagggtac
atcttcctggagtactcctgtcctgcgcatgcccttgaggctgtgaagaatgcagatggt
tacaaactggacaagcagcacaccttcagggttaacatcttcacagactttgacaagtat
atgaatatcagtgatgaatgggaaacaccagagaagcagccattcaaagactttgggaac
ctgcgtcactggctggaagatgcagattgcagagaccaatacagtgtgatttttgaatcg
ggggaacgcacaggcatctttgccaatgatgctaaggaaccaattgttgtagaagagaga
gcacgctggacagagacgtatgtccgctggtctcctagaggtacctatctggccacattc
catcagaggggcattgctctgtggggaggagagaagtttaaacagatccagaggttcagt
caccagggggtgcagctcattgacttctctccatgtgaaaggtacctggttacattcagc
ccactgatggatacaaaggatgacccccaggccatcatcatctgggatgtcctgactgga
cagaaaaagagaggtttccattgtgagagctctgctcattggccaatcttcaagtggagt
catgatggaaaattctttgccagaatgacacaagacacactcagcatctatgagacccca
tctatgggattattggacaagaaaagtttaaaaatcagtgggataaaggatttttcttgg
tctccgggtgacaatatcattgctttctgggtacctgaggataaagatatcccagcaagg
gtgacgctgatgcagcttccgtctcggcaagagatcagagtccgaaacctgttcaacgtg
gtggactgtaagcttcactggcagaagaatggggattacctttgtgtgaaggtagaccgg
acccccaaggggacacagggtatggtgaccaactttgaaatcttccgaatgcgggaaaag
caggtgccagttgatgttgtagaaatgaaagagggtatcatagcctttgcttgggagcca
aatggcagtaaattcgctgtgctgcatggagagtctccgagaataaattcctcattctac
catgttaaaaacaacggcaaaattgagcttattaaaacgtttgataagcagcaagcaaac
agtattttctggagtcctcagggtcagtttttggtgttggctggtctgagaagcatgaat
ggtgctttggcatttgttgacacatcggactgcaccatgatgaatattgcagaacattac
atggcatcagatgtagagtgggacccaactggacgatatgttgttacatcagtgtcttgg
tggagccataaggtggacaatgcattctggctgtggactttccagggtcgtctccttcag
aaaaacaacaaggatcgtttttgccagcttttgtggagaccccgaccaccaacactgctt
gatgtggagcagataaaactcattaagaaggatctgaagaagtactccaagatctttgag
cagaaggatcgtctgagtcagtccaaggcctccaaggaactggttgacagaagacgaaca
atgatcgaagagtatcatgcataccgtgagaatgcccagaagatataccaggagcaaaga
gtgcttcgcctggatctccgaggaggtgtggacacagatgagcttgacagcaatgttgaa
gactgggaggaggagaccattgaattttttgtcaatgaagaaattattccccttggagag
caggcgtaa
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