Polyodon spathula (Mississippi paddlefish): 121331098
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Entry
121331098 CDS
T07273
Name
(RefSeq) nucleoprotein TPR-like isoform X1
KO
K09291
nucleoprotein TPR
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121331098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121331098
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121331098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
ERM_helical
HALZ
YwqH-like
AAA_assoc_2
Motif
Other DBs
NCBI-GeneID:
121331098
NCBI-ProteinID:
XP_041134202
LinkDB
All DBs
Position
18:25468866..25491279
Genome browser
AA seq
2368 aa
AA seq
DB search
MAAVLQQILERAELNKLPKPVQNKLEKFLSDQQSEIDALKARHERFKVDSEQQYFEVEKR
LAQSQDKLVSESQDRHSLQEELNKHNEELKSMKAKIKEYETAQESFSSKQSQLTRTKDEL
EAEKRELVRKLEKSSQEGEHLSEDLRRLNAKLVETNTAKMELQLKLDELQSSEVSIKYRE
KRLEQEKELFQSQNTWLNAELSAKTDELLSVSREKGNEILELKCNLENKKDEVTRLEEQV
STLKASNENFQNQVEDLMGKLKDAKEQQAGMEERFRNELNAHIKLSNLYKSSAADSESKA
GELTRAVEELHKLLKEAEEAIKVTERRQTETEASKESMEAELKEKIVNLEKELDNANDLL
SAFKRKGVAALTEEELTTMSPTAAAVAKIVKPGMKLTELYNAYVESQDQLLLEKLEIKRV
NKYLDEIVQEVEAKAPILKRQREEYERMQKSVASLSAKLEQAMKEIHRLQKDTDEANKRS
SVLERDNQRSALQLTDMSQQIRVLLIELEEARGNHVIRDDAGEEVSSADISSSSEVISQR
LVTYRNIEELQQQNQRLLVALRELGEAREKEEQETTSSKVAELQLNLEKALSELERLRDG
RNHQMQLVESIVRQRDMYRILLAQTTGVSFPMQSVSEEIALTSTPRRSPGVTPTVSTPAQ
MSTLQSTELVEARAALKQLQEVFLMYKKEKAENDKILNEHSEKLQEQVTELRSQNTKIST
QLEFASKRYEMLQDNVDGYRREIASMREKCQKLSTTTQKQEQIIHTMTQDLRAVNEKLAV
AEVRGENMRKERDMLKMVESRLYQEKESILAEQRGQNLLLTNLQSIQVTLDRSETETKQR
LNNQIEKQEREIIQLKKKLEYEVEQRHLLGRNQDLQLLEAKKQLETQGAMHLKTKELLKT
AEKEIATLRQQISNAESQLASQVSQGAGTKGPQGAEKDLEDLRTRLRQAEEQNNDLRERL
KTSTSNVEQYRSMVLSLEESLNKEKQVTDEARTTIEARLKESREYQVQLEKKLVEAEKEK
QDLREEKRKAIVNLEEQMSELKKNLSNIQAELQDALQRAAVASSHEQKATQDSQLQAKLA
AESQNKYERELMLHAADVEALQAAKKQVSQTSQMRQELEEKAQRAQAQLLEGKISWEEQE
RMLKDEVSKLASRCEDLQKQNSLLHEQVESLGNKMVASVQQVTQESNLNISLSEEGKSHE
QILEILRFVRREKEISETRFEVAQVESLRHRQRVEHLERELKELQDSLNAEREKAQVTAK
TLAQHDALMKKTDSMNILVETNKMLREERERLEQELQQTQAKVRKLEADIMPLQESNAEL
SEKSGMLQAEKKLLEEDIKRWKTRTQHLLSQQKDADPEEYKKLHSEKEAHLKRIQQLTEE
TGKLKTDIARLHASVSTAQSQVGSLKENLGKVSAEKETLQKDLEAKALDIQEKAKTITQV
KKIGRRYKTQYEELKAQHDKLVAEAAAKPIIEQEAQQASAQEIQDLKNALGQAETKVKEL
DGQVENLQKLASERELEVKSMQEQLSKLQPELSRMRQDLQEKSTQEEQLRQQMTEKEEKT
KKAFMGAKQKINQLIGAKEQLSKENDELKQHREEQEVRMSALKSQYEGRICRLERELRDQ
QERHHEPRDEPPETPSKAQEQQRQAEQRQISLKTTPASVDRGSASSSEPPTANIKPTPLV
PTPSKAAAIPGNKPTPRASIRPMITPPTTTPTATVMPTTQVETQEAMQSESPVEHVTVFG
SASGSIRSTSPNVQTALSQPIHTVQQQQSQATAFVQPTQQSLPQIEPASQEPAPAPAPSP
AMVEAVQSTQVDRPSTSTAVFGTVSATPGSLLSKRPREEEDENTTDVTEPVQEETGDQPL
PKKLRIIQRVGPEEEVVAEESTEIEIETPAESQESQEPGQLVIEVYPPLEDSEELVPQSV
PVDMVPPLPEQQNTQDSQEEKQHDVIVIDTDSDTEEEENDEEGEQEYEEDEDEEDEDDTG
MGDEGEESNEGSGSADGNEAYEGDDTEQGAEATDPGTENEESLGATEMSQRMADSQDSGE
GSSSTTESPFSSEPPREPLQPAPNSTDRPSPRHPQSPRRHPHPLPPRLTIQAPAQELGPP
PQRIPIRRQSVGRGLQLTPGIGGMQHFFDDDDRMVPSTPTLVVPHRTDGFAEAIHSPQVA
GVPRFRFGPLDDMPHAGSSHSDLGQLASQGGLGMYETPLFLAAHEEESGGRSVPTTPLQV
AAPVNVFAEVHPSDISEHASQSVPMVPTSTGNLSTTSEAGQGDEGDEVFMEAEPERASAV
EALLELENQSEAEESGQPSGDADLPSTSQDLPSSSSADTSSNQPKPFRLVNRQPQSGKTE
PRGRQITRQRGVSHAVGSRGRYNRGNMS
NT seq
7107 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggtactgcaacagatactggagcgtgctgagctcaacaaactccccaaacct
gtccagaacaagctggagaagttcctttcggaccagcaatcagaaatagatgcactcaaa
gcccgccacgagcgttttaaagtagatagtgagcaacaatactttgaggttgagaagcga
ctggcgcagagtcaggataagcttgtgtctgaatctcaggaccgtcatagcctacaagag
gagctcaataagcacaatgaggaattgaagtctatgaaagcgaagattaaagaatatgaa
acagcacaagagagcttttcatcaaaacagagtcagcttactagaactaaggatgagctg
gaggctgaaaaacgtgaattggtcagaaaacttgagaaaagttcccaggagggggaacat
cttagcgaggacttgagacgcttgaatgcaaaacttgtggaaaccaacactgcaaagatg
gaactccagttgaaacttgatgaacttcagtcttcagaggtttcgatcaagtaccgggaa
aagcgattggagcaggagaaggagctgtttcagagccagaacacctggctaaacgctgag
ctgtccgccaagactgatgagctgctttctgtctcccgcgagaaaggaaatgaaatcttg
gagcttaaatgtaacctggagaacaaaaaggacgaggttaccagactggaagagcaagtg
agcaccctaaaagcatccaatgagaacttccaaaatcaagtagaggacctgatgggcaaa
ttgaaagacgcaaaggaacagcaggccggcatggaagaacggttccgcaatgaactcaac
gcacatataaaactttccaatctgtataagagctcggcagcagattccgagtccaaggct
ggtgagctaaccagggcagtggaggagctccacaagctgttaaaggaggctgaagaagcc
attaaagtgactgaacgacggcagacagaaacggaggcctccaaagaaagcatggaagca
gagctaaaagaaaagattgtcaatctggagaaagagctggacaatgctaatgacctgctc
tctgcttttaagcggaaaggtgtggctgcacttacagaggaggagttgacaacgatgtct
cccactgcggcagcggtagcaaaaatagtaaaacctggaatgaagttgacggagctctac
aatgcttatgtggaatctcaggatcagttgctgttggaaaaactggagatcaaacgtgtt
aacaagtacctggatgagattgttcaggaggttgaggccaaggctcctatcctgaaacgc
cagcgtgaggagtatgagcgcatgcagaagtctgttgccagtctttcagctaaactagag
caggcaatgaaggaaattcacagactccagaaagatactgacgaggccaacaagcgttcc
tctgtgctagagagggacaaccaaagatctgcgctccagctgactgacatgtctcagcag
attagagttttgctgattgagctggaggaggcaagagggaaccatgtgatccgcgatgat
gctggtgaagaggtgagctctgctgacatcagcagttcctctgaggtcatatctcagcgt
cttgtcacctaccgcaatattgaggaactgcagcagcagaaccagcgcctcctcgtggca
ttgagagaacttggagaggcacgggagaaggaagagcaagaaaccacatcttcaaaggtt
gccgagctgcagttgaacttggagaaagcccttagtgagctagaacgacttcgggatggc
cgcaatcaccagatgcagctggtggagtccatcgtacgccagcgagatatgtaccgcatc
ctgctggcacagaccacaggagtctccttccctatgcagagtgtttcagaggagattgca
ctgacctccactcctcgacgctctcctggagttactccaacagtgtctactccagctcaa
atgtccacattacagtcaactgagttggtcgaagccagggcagcacttaaacagctgcaa
gaagtgtttttaatgtacaagaaggagaaagctgaaaatgataaaatcctcaacgaacat
agcgagaagctgcaagagcaagtcactgaactgcgttctcagaacaccaaaatatccacc
cagttggagtttgcttccaagcgttatgagatgctgcaggataatgtcgatgggtaccga
cgtgagattgcatcaatgagggagaagtgtcaaaagctgtccactactacccagaaacag
gagcagataatccacacaatgacccaggatctccgtgctgtcaatgagaagctggctgta
gccgaggtgagaggtgaaaatatgagaaaggaaagggatatgctgaagatggtggagtca
aggctttatcaagagaaggaatctattcttgcagaacagagggggcagaacctgctgtta
actaaccttcagtccattcaggtgacgctggatcgctctgagacagagaccaaacagcga
cttaacaaccagattgagaaacaagaaagggagattatccagctgaaaaagaaactggaa
tatgaggtggagcagagacacttacttggcagaaaccaggatttgcagctgctagaagct
aagaagcagcttgaaacacaaggagccatgcacctcaaaaccaaggagctgctgaaaact
gcagagaaggagattgctacgctgagacagcagatcagcaatgctgaatcccagctagca
tcacaggtgtcacaaggagctggcactaaaggaccccagggtgcagagaaggaccttgag
gatcttcgcactcgcctcaggcaggcagaggagcagaacaatgatctgagggagcgtctg
aaaacctccaccagcaatgttgagcagtacaggtctatggttctcagtctggaggagtct
ctgaacaaggagaaacaggtaactgatgaagctcgtactacaattgaggctcgtctgaag
gagtctcgcgagtatcaagtgcagctggagaagaaactggttgaagcagagaaggaaaaa
caggacctgcgggaggagaagcgcaaagccattgtgaatctggaagagcagatgtctgag
ctgaagaaaaacctgtccaacatccaggcagagctccaggatgcccttcagagggcagct
gtagcctcttcacatgagcagaaggccacccaggacagccagctgcaggctaagctagct
gcagagtcccagaataagtatgagcgtgagctgatgctgcatgctgctgatgtggaggcc
ctccaagcagctaagaagcaggtgtctcagacctctcagatgcggcaggagctggaggag
aaagcacagagagcccaggcacaacttctggagggcaagatatcctgggaggagcaagaa
aggatgctgaaggatgaggtatccaagctggcatctcgttgtgaggacctacagaagcag
aacagtctgctacatgaacaagtagaaagcctaggcaataagatggtggcctctgtacag
caagttacccaggagagcaatttgaacatctccctgagtgaggaaggaaaatcccacgag
cagatcctcgagattcttaggtttgtccgccgggagaaggagatttcagagaccaggttc
gaagtggctcaggtggagagtttgcgtcaccgccagcgagttgagcacctggaaagggag
cttaaggagctgcaggacagtctgaatgcagagcgggagaaagcacaggtaacagctaag
actctagctcagcacgatgcactcatgaagaagactgattccatgaacatccttgtggag
actaataagatgctgcgggaggagagggagaggttggagcaggaacttcaacagacgcag
gcgaaagtgcgcaagctggaggcagatataatgccactacaggaatccaatgcagagctg
agtgaaaaaagcgggatgcttcaggctgagaagaagctactggaagaggatatcaaacgc
tggaaaactcgcacacagcacctgctaagccaacagaaagatgctgatcctgaagagtac
aagaagctccattcagagaaggaggcccacttgaagcgcattcaacagctgactgaagaa
actggcaaactgaagactgatattgcaaggttgcatgcatcagtgtccacagcacagagt
caagtcggtagtctgaaggagaatcttggtaaggtctctgctgaaaaagagacgctgcag
aaggatctagaagctaaagcactggatatccaggaaaaggcaaagaccatcacgcaggtg
aagaagattggccgcaggtacaagactcagtacgaagagcttaaagcacagcatgacaag
ttggttgctgaagctgctgctaagcccatcattgagcaggaggcccagcaggcatctgcc
caagaaattcaggatctaaaaaatgctcttggccaagcggagactaaggtcaaggagctg
gatggacaggttgaaaatttgcagaagctggctagcgagcgtgagttggaggtgaaaagc
atgcaggagcagctctccaaactgcagccagagctgagccgaatgcgccaggaccttcag
gagaagtccacccaggaggagcagctccgccagcaaatgacagagaaagaggagaagacc
aagaaggcattcatgggggcaaaacaaaagataaaccagcttattggtgccaaggagcag
ctgtcaaaagagaatgatgagctgaagcagcacagggaggagcaggaggtgcgaatgagt
gccctgaaatcccagtatgaaggtaggatctgccgtctggagagagagctgcgtgatcag
caggagaggcaccatgagccaagggatgagcccccggaaactcccagcaaggctcaagaa
cagcagagacaagctgagcagaggcaaatctcactgaaaaccacacctgcctcagttgat
agggggagtgctagctcttcagagccaccaacagccaacattaagccaactcctctggtt
ccaacgcctagcaaagctgctgccattcctggtaacaagcccactccgagagccagcatc
cgtccaatgatcaccccaccaaccaccactcccacagccactgtcatgccaacaactcag
gtggagacccaggaagccatgcagtctgaaagcccagtggaacatgtcactgtgtttggc
agtgccagcggatcaattcgatctacaagccccaatgttcagactgccctttcccagccc
attcatacagtgcagcagcaacagagtcaagccacagcctttgtacagcccacccagcag
agcctgccacaaatcgagccagccagtcaggagccagccccagccccagccccctcccct
gccatggtggaggcagtgcagagcacccaagtcgacaggccttccacctccactgctgtt
tttggcacagtttcagctacacccggctctttattgtccaagcggcctcgtgaagaggaa
gacgaaaacacaactgatgtcacagagccagtgcaggaggaaactggtgatcaacctctt
ccaaagaagctgcgaatcattcagagagttggccccgaggaggaagtcgtagcagaggag
agcactgaaattgaaatagaaactccagcagaaagccaggaatcccaagaacctgggcag
ctggttattgaagtgtaccctcccctagaggacagtgaggagcttgtacctcagtcggtc
cctgtggacatggtcccaccccttccagagcaacagaacacccaagactctcaggaggaa
aagcagcatgatgtcattgtgatcgacacagacagcgacacagaggaggaagagaatgac
gaggaaggagagcaggagtatgaggaggacgaagatgaggaggatgaagatgatactggg
atgggagatgaaggggaggagagcaatgagggaagtgggagtgcagatgggaacgaggct
tatgaaggagatgacaccgagcagggtgctgaagcaacagaccctggcacagagaatgag
gagagtctaggagcaaccgagatgagtcaaagaatggcagattcacaggacagtggtgaa
ggaagcagcagtaccacagaatcccctttctctagcgagccacccagagagccactgcag
ccagctccaaacagcaccgacagaccatcccctcggcaccctcagtcaccacggagacat
cctcacccgctgccacccaggctgaccatccaggctccggcccaggagctaggaccaccc
ccacagcgcattcctatccgtcgccagtctgtaggcagagggcttcagctgacacctggg
attggtggcatgcaacactttttcgatgacgatgatagaatggtacctagcacaccaaca
ctggtcgtgcctcatcgcacggatggctttgctgaagctattcactctccccaggttgct
ggagttccgagatttaggttcggtccacttgatgacatgccccatgcgggctctagccac
tcggaccttgggcagctggcatcacaaggaggtctaggaatgtacgaaactcccctgttc
cttgcagcacatgaagaggagtctggtggacggagtgttccaactacaccactgcaggtt
gctgcaccagttaatgtctttgctgaagtccacccctctgacatctcagagcatgcttct
cagtcggtgccgatggtccccacgtcaacgggaaacctgtccaccaccagcgaggctggg
caaggagatgaaggagacgaagtgttcatggaagcagagcctgagagggctagtgcagtt
gaagctttactagaattggagaaccagtctgaagcagaggagtcaggtcagccatctggt
gatgcagatctcccctccacaagccaggatctaccctccagctcttcagcagacaccagc
agcaaccagcccaaacctttcaggctggtgaatcggcagcctcagtctgggaaaacagaa
ccccggggacgtcaaataacccgccagagaggtgtaagccatgcggtgggcagtagaggc
cggtataatagaggaaatatgagttaa
DBGET
integrated database retrieval system
