Polyodon spathula (Mississippi paddlefish): 121331110
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Entry
121331110 CDS
T07273
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H-like isoform X1
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04010
MAPK signaling pathway
pspa04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121331110
04020 Calcium signaling pathway
121331110
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pspa04040
]
121331110
Ion channels [BR:
pspa04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
121331110
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
Motif
Other DBs
NCBI-GeneID:
121331110
NCBI-ProteinID:
XP_041134248
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Position
18:3930807..3998327
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AA seq
2336 aa
AA seq
DB search
MLVILLNCTTLGMFQPCDDVKCQSEWCTVLQAFDDFIFAFFAVEMVIKMIALGIFGQKCY
LGDTWNRLDFFIVMAGMLEYSLDGHNVSLSAIRTVRVLRPLRAINRVPSMRILVTLLLDT
LPMLGNVLLLCFFVFFIFGIVGVQLWAGLLRNRCFLEDNFKTAYNLSFLTPYYKQEEGEE
TPFICSTNRDNGMVRCPDIPRLKENRVECSLSMFHDSHSHNSMDVGNINGCINWNQYYNV
CKTGNLNPHKGAINFDNIGYAWIAIFQVITLEGWVDIMYYVMDAHSFYNFIYFILLIIVG
SFFMINLCLVVIATQFSETKQRENQLMQEQRARYLSNDSTLASYSEPGSCYEELLKYISH
LYRKVKRRVGRLYSNWQSKRRKKVNPNSINSVISGQGRRRRNKRRIRSIHHLIHHHHHHH
HHHYHISNGSPRGLRGNSEICDVMEMRSMRPGSQLMLQSPSPNLQSPSSGTESVHSIYHA
DCHFQGPPVRCKSSNAAGNVKVISGIHGGMNYPTIVPSMSSSRSSMPKSKGKRNSNHPMS
LSRATGNISIPDPYGKIHQFVGEHGVYRASSRLSGLNMPCSMASNQPSMLSCELAKCPYC
ASALDNPEFDLSDSDSGDSNADVVYEFTQDLRRGTEFRNRQSGRKKKTKEKNKLSQCWYL
FCQKLNRIVESKYFNRGIMIAILINTLSMGIEYHEQPKELTDALEISNIVFTSMFALEML
LKLLAFGLFGYIKNPYNIFDGIIVIISVWEIIGQSDGGLSVLRTFRLLRVLKLVRFLPAL
RRQLVVLMKTMDNVATFCMLLMLFIFIFSILGMHLFGCKFSVTTENGDTIPDRKNFDSLL
WAIVTVFQILTQEDWNVVLYNGMASTSPWAALYFVALMTFGNYVLFNLLVAILVEGFQAE
GDANRSDTDEDKISTNFDDEDKLRDLHSSELKMYSLMMTPNGHVDSRASIAPPIIMHTAA
TPVPTPKSSPFMDSVHTFNESRRASSSSIDPNAYDQRSLSSIRSSPCAPWGSASNWGSRR
SSWNSLGRAPSLKRKNHSGEHESLLSGEGRGSFEDEDSDGGKSSKAGSVCGTSLQHRTES
LDTRGSLDLPELLQVPMLRHHSMAEHQDCNGKALHIPHEFFLHIDNHKDDPSDYEEDIDG
SYCFRIRKMLEPYKPEWCKDHEDWSLYLFSPQNQFRVMCQKLIAHKMFDHVVLVFIFLNC
ITIALERPDIQPHSTERVFLSISNHIFTAIFVTEMTVKVVALGFFSGENTYLQSSWNILD
GVLVFVSIIDIIVSLASAGGAKILGILRVLRLLRTLRPLRVISRAPGLKLVVETLITSLR
PIGNIVLICCAFFIIFGILGVQLFKGKFYYCEGFDTKNITNKSDCLQTNYRWVRRKYNFD
NLGQALMSLFVLSSKDGWVNIMYDGLDAVGIDQQPVRNHNPWMLLFFISFLLIVSFFVLN
MFVGVVVENFHKCRQHQEAEEARLREEKRLRRLEKKRRSKEIYVSEAQRRPYYANYSPAR
LYIHTLCTSHYLDLFITLIIGINVITMSMEHYNQPKSLDEALKYCNYVFTIVFVFEAILK
LVAFGLRRFFKDRWNQLDLAIVLLSIMGITLEEIEMNASLPINPTIIRIMRVLRIARVLK
LLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGKLVCNDENPCEGLSR
HATFENFGMAFLTLFRVSTGDNWNGIMKDTLRECSSEDKHCLSYLPLFSPVYFVTFVLIA
QFVLVNVVVAVLMKHLEESNKEAKEDAEMDAEIEMEISGRLSASTGERPLGADSRATYVG
PKPDSPGQDEAKSDKQGKEDGQENLLSVRKVSVSRMHSLPNDSYMFRPVKPANTPYPLTE
VESFDGELQSGSAISVQSQAAEVDSLLQIPVTTVHSHSASPLLDKNSLPKIPPPQIASRS
PSINRLLQRQEAIKHDSFDTHNDNSRDNLQGQSSDSLSFKVPVQSSLTLPLLRPIVVSAH
STPQPSPLLPPRSRTSSVHTHRLVYSQHSILSQPSSQTSSNSANPGNSVFDSVDPTDEEV
QHINSTAKDWSRQSDARSHSLSPFISSAQSPVPLKNCSSATSLAGTNMKDKDLKKFYSVD
TEGFLAKPSWADDPRRHSIEICPSIDDGDSVFDQSSDNRRSSSLHGQSESPYTPGTQRKK
KMSPPCISIDPPLENENSATATSLTKVSENSMMLRRRTPSSESAVYRDSLDLLEAQPTVD
QPSKSEKRISISCRKDHLSIPQFSFDQSDVGSMSSLSDTLSDSDQSTPSSSISFDSKNET
GAASELKKPDHLKVQHRDNSETSIKGLLNVTRSPLRKRGLVRTVSTRDEDTDDSVV
NT seq
7011 nt
NT seq
+upstream
nt +downstream
nt
atgctcgtaatcctcctgaactgcaccaccttggggatgttccagccctgtgatgatgtc
aagtgtcagtccgagtggtgcactgtccttcaggcatttgatgactttatttttgcattc
tttgctgttgagatggtcatcaagatgattgccctggggatttttggacagaaatgttac
ctgggagacacatggaaccgtctggatttcttcattgtcatggcagggatgctggagtac
tcactggatgggcacaatgtcagcttgtctgcgattcgtactgtgcgggttctcaggcct
ctcagagccattaacagagttcctagtatgagaatactagtgaccctgctgttagacact
ctgcctatgctaggcaacgtccttctcctttgtttttttgtcttctttatattcgggatt
gtcggagtgcaattgtgggctggcctgctgaggaacaggtgtttcttagaagacaatttt
aaaacggcttacaatctatcttttttaaccccgtattacaaacaagaggagggtgaagaa
accccattcatctgctccaccaatagggacaatgggatggttaggtgtccggacatcccg
cgcttgaaggaaaatagagtggagtgttctctcagcatgttccacgacagccactcacac
aacagtatggacgtgggaaacataaacggctgcataaactggaaccaatattataatgta
tgcaagactgggaacctgaacccacacaaaggagctattaactttgataatattggatat
gcctggatcgctatttttcaggtcataactttggaaggttgggtggatatcatgtattat
gttatggatgcacattctttttacaattttatatattttatattacttataatagttggc
tcattctttatgattaacctgtgcctggttgtgatagcaacccagttctcagagacaaag
cagcgtgaaaaccagctcatgcaggagcagcgcgcccgctatctctccaacgacagcacg
ctggccagctactcggagccaggcagctgctacgaggagctgctcaagtacatcagccac
ctctaccgcaaggtgaagcggcgagtcgggaggctgtacagcaactggcagagcaagagg
aggaagaaagtcaaccccaacagtatcaacagtgttattagtggacagggcaggaggcgt
agaaacaaacgtcgaatccgatcaatccaccacctgattcaccatcaccaccaccaccac
caccatcactaccacatcagcaacggcagccctcgtggcctcagggggaactctgagatc
tgtgatgtcatggagatgagatccatgagacctgggagtcagttaatgcttcagtcaccc
tcccccaatcttcaaagcccttcgtccggaacagagtcggttcacagcatctaccacgct
gactgtcatttccaagggccaccggtcagatgcaagtcttccaatgcagcagggaatgtt
aaagtgatcagcgggattcatggaggcatgaactatcccaccattgtcccctccatgtcc
agtagtaggtccagcatgccaaaatccaaggggaaaagaaacagcaaccaccccatgagt
ctaagcagggcaacgggtaatatcagcatcccagatccttatgggaagatccaccagttt
gtgggagagcatggtgtgtatcgggcttccagtcgcctgtctggcctcaacatgccctgc
tcaatggccagcaatcagcccagcatgctgtcctgtgagctggctaaatgcccttattgt
gcaagcgcactggacaaccctgagttcgatctcagcgactctgacagtggcgactcgaac
gcagacgtggtttacgagttcacacaggacctgcggcgcggcacagagttcaggaaccgc
cagtccggtagaaagaaaaaaacaaaggaaaaaaacaagctttcacagtgctggtattta
ttctgccagaaactgaacaggattgtggaaagtaaatattttaaccgtgggattatgata
gcaatcctgatcaacactttgagcatgggaatcgagtatcatgaacaaccaaaggagttg
acagatgccctggagatcagtaacattgtcttcaccagcatgttcgccctggaaatgctg
ctgaagctcctggcattcggcctatttggatatattaagaacccctacaacatcttcgat
gggatcattgttattatcagtgtatgggagattatcgggcagtcggacggaggcctctcg
gtcctcaggactttccggctgctccgggtcctcaaactggtgcgtttcttgccagcgctg
agacgacagctggtcgttctgatgaagaccatggacaacgtggctactttctgcatgctg
ctcatgctcttcatcttcatcttcagcattcttggaatgcatctttttggatgcaagttt
agtgtgaccacggaaaacggagacactattccagatagaaagaattttgattccttgctg
tgggcgattgtcactgtgtttcagatcctcacccaagaagactggaatgtggtcctctat
aatggaatggcatctacttccccctgggctgccctgtacttcgtggctttgatgactttt
ggaaattatgtactgtttaacctgctggtcgctattctggtggaagggtttcaagcagag
ggggatgcaaaccggtctgacacagatgaagataaaatatcaaccaactttgatgacgaa
gacaaattgagggacttgcattcatcagaattgaagatgtactctttgatgatgactcct
aacggacatgtggactcacgggctagcatagccccgcccatcatcatgcacactgctgcc
acacccgtgccaacccccaagagctcgcccttcatggactcggtccacaccttcaatgag
tcgagacgggccagcagctcctccattgaccccaacgcttacgaccagaggtccctgtcc
agcatccgcagctccccgtgtgctccctggggctcggccagtaactggggcagccgacgg
tcaagctggaacagcctgggccgggctcccagcctcaagcggaagaaccattccggggag
catgagtctctgttgtccggggagggccggggcagcttcgaggatgaggattcagatggt
ggcaagtccagtaaggccggcagtgtctgtgggacgtcactgcagcaccgcacagagtcc
ttggacacccgcggctcccttgacctgcccgagctcctgcaggtccccatgctgcgtcac
cacagcatggctgagcaccaagactgcaacggcaaggccctccacatccctcacgagttc
ttcctgcacattgacaaccacaaggacgaccccagtgactatgaggaggacattgatggc
agttactgcttcaggatcaggaagatgcttgagccatacaaacctgagtggtgtaaagat
cacgaggactggtctctctatctgttttctccacagaaccagtttcgcgtgatgtgtcag
aagcttattgctcacaagatgtttgaccatgtagttctcgttttcatcttcctcaactgt
atcaccattgcactggagaggcctgatattcaaccgcacagcactgagagagtgtttctg
agcatctctaatcacatcttcactgccatttttgtaacggaaatgacagttaaggttgtt
gcgctgggattcttctcgggtgagaatacttacctccagagcagctggaacattctggat
ggggtgttggtcttcgtctcaataattgatatcatcgtctccttggcctctgctggggga
gcaaagattcttgggatacttcgggttcttcgactgctgagaacactccggccactgagg
gtcattagccgagctccaggtctcaagctggtggtagagacgttaataacgtctcttcgg
cccattggtaatatcgtgctgatctgctgtgcattcttcatcatattcggtatcctcggg
gtgcagctgttcaaagggaaattttactactgtgagggatttgacacaaaaaacataacc
aacaaatctgactgtctgcaaacaaactaccggtgggttcgtaggaagtacaactttgac
aacttgggacaggccctgatgtctctgttcgtgctctcctccaaggacggctgggtgaac
atcatgtatgatggtctggatgccgtggggatagatcagcagcctgttagaaaccacaac
ccttggatgctgctgttcttcatctccttcctgctgatcgtcagcttctttgtgctcaac
atgtttgtgggcgtggtagtggagaacttccacaagtgccggcagcaccaggaggcagag
gaggcgcgcctcagagaggagaaacgtctccggcggttggagaaaaagcgcaggagtaag
gagatatacgtgtctgaagcccagagacgcccttattatgccaattactctcctgcccgc
ctctacatccacactctgtgtaccagccactacctggatctcttcatcaccttaatcatt
ggaattaatgtcatcaccatgtccatggagcactacaaccagccaaagtccctggatgag
gccctgaaatactgcaactacgtgttcaccatagtgtttgtgttcgaggcgatcttaaaa
ctggtggcatttgggcttcgaagattcttcaaagacagatggaaccagctggatctggcc
attgtacttctgtccataatgggaattactttggaagaaattgaaatgaatgcctctctt
ccaatcaacccaaccatcatccgcatcatgagagtgctaagaatcgcaagagttctgaag
ctattaaagatggctactggaatgcgagctttgctggacacagtggtgcaggcgttgcca
caggtggggaatcttggcttgctcttcatgctcttgttcttcatctacgcagctctgggg
gtggagcttttcgggaagttagtttgtaatgatgaaaacccttgtgaaggtttaagcaga
cacgccacgtttgagaactttggaatggcatttcttacactgtttcgggtgtccactggt
gataactggaacggcataatgaaggataccctgcgcgagtgcagcagtgaggacaagcac
tgcctgagctacctgcctctgttctcgccggtgtacttcgtgaccttcgtgctgattgcg
cagttcgtgctggtcaatgtggttgtggccgtgctcatgaagcacctggaggagagcaat
aaggaggccaaggaggacgcagagatggacgctgagatcgagatggagatttcaggacgg
ctcagcgcctcaacaggggagaggcccctgggggccgacagcagggccacctatgtgggg
ccaaagccagactccccaggacaggatgaagctaagagtgacaaacaagggaaggaagat
gggcaggagaatcttctatctgtgaggaaagtttctgtgtccagaatgcactctctgccc
aacgacagttacatgttccggccggtgaagccagctaacaccccttaccccctgacagaa
gttgagtcttttgatggagaactgcagtcagggtctgcgatttcagtgcagtctcaagca
gctgaagtggattctttgctccagatcccggtgacgactgttcactcacactctgcatct
cctctccttgacaaaaacagcctgcctaagatcccacccccacagattgcttcccggtct
cccagcatcaaccggctgctgcaaagacaggaggcaataaaacatgactcctttgacaca
cacaacgacaattcgagggacaaccttcagggccaatccagcgacagtctgtcgttcaaa
gttccagtccagagcagcctgactctgccgttactgcggcccattgtggtctctgcccac
agcacccctcagccgtctccactcctgcccccccgcagccgcacttccagcgtgcacacc
cacaggctggtgtacagccagcacagcattctcagtcagccctccagccagaccagcagc
aacagcgccaatccaggcaactctgtgttcgattcggtggatccaacagacgaggaggtg
caacacatcaacagcacggccaaagactggagcaggcagtcagatgctaggagccactct
ctgtccccgttcatctcttctgcccagtcgccagtccccctgaagaactgcagcagtgcc
accagcctggcaggaaccaacatgaaggacaaggacctgaagaagttctacagcgttgac
accgagggcttcttggctaaaccatcatgggccgatgacccacgcagacactccattgag
atctgcccctccatcgacgacggagactctgtctttgaccagtcctcggacaataggcga
agttcttctctgcacggccaatcagagtctccatacacaccgggtacgcagaggaagaaa
aagatgagcccgccctgtatctctatagatcctcctttagagaatgagaactctgccact
gctacgtctctaaccaaagtatctgaaaacagcatgatgctgcgcaggaggacaccgtcc
tccgagtccgctgtttacagggactccctggaccttttagaggctcagcccacggtggac
caaccttcaaaatccgaaaagcggatctcgatctcctgccggaaagatcacctttccatc
ccccaattctccttcgaccaatcagacgtcggctctatgagcagcctttccgacaccctg
tctgatagtgaccaatccaccccttcttcctccatttcctttgactccaaaaacgaaacg
ggggcggcctcagaactgaagaaacccgaccaccttaaagttcagcacagggacaactct
gaaaccagcattaaaggactgctcaatgtaacgagaagccctttgagaaagcgcgggctc
gtccgcacggtcagcacaagagatgaagacacagacgactcagtcgtatag
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integrated database retrieval system
