Polyodon spathula (Mississippi paddlefish): 121331111
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Entry
121331111 CDS
T07273
Name
(RefSeq) RNA-binding protein with serine-rich domain 1-like
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03013
Nucleocytoplasmic transport
pspa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121331111
03015 mRNA surveillance pathway
121331111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121331111
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121331111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_occluded
RRM_3
RRM_5
Nup35_RRM_2
DDHD
Motif
Other DBs
NCBI-GeneID:
121331111
NCBI-ProteinID:
XP_041134250
LinkDB
All DBs
Position
18:complement(11867593..11883994)
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AA seq
280 aa
AA seq
DB search
MAPSPTKKKDRSDDKVKERGTKVGVKEGGEKDRGREKGHKRRSASTGSSSRSRSSSSSSS
SSGSSSGSSSGSSSSSASSRSGSSSSSHSSSSSSTSVSPSRRRRDNRRSSRSKSKSLKRE
EKERKRRSPSPRPSKVHVGRLTRNVTKEHIMEIFSTYGKIKMIDMPVNKLHPHLSKGYAY
VEFETPDEAEKALKHMDGGQIDGQEITASAVLTPRPRPPPRRLTPPRRMPPPPPMWRRTP
PRMRRRSRSPRRRSPVRRRSRSRSPGRRRHRSRSSSNSSR
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atggcaccatcacccacaaaaaaaaaggatcgctcagacgacaaggtgaaggagcggggt
accaaggtgggggtgaaggagggaggggagaaggaccgtggcagagagaaaggacacaag
cggcgcagtgcttcaactgggagcagcagcaggtctcgctccagctccagctccagttcc
agttcaggttccagctctggctcctccagtggctcaagctcctcatctgcatccagccgc
tccggctcctccagcagttcgcacagctccagctccagtagcacctcggtctcccccagc
cgccggcgccgtgacaaccggcgcagctcccgctccaaatccaaatccctgaagagagag
gagaaagagaggaagaggaggagtccaagccccaggccctccaaggttcacgttggccgg
cttacgagaaatgtcaccaaagagcacatcatggagattttctcgacttatgggaagata
aagatgattgacatgcctgtaaataaactccatccccacctgtcaaagggttacgcctat
gttgaatttgagaccccagatgaagcagagaaggcactcaaacacatggatggaggtcag
atagatggtcaggagatcacagcgtcggcagtgttgaccccccggcctagaccaccccct
cgtagactgacccccccgcgtaggatgcctcccccgccccccatgtggcgccgcacccca
ccgcgcatgagaaggaggtctcgctccccacgccgcaggtctcctgtacgccggcgctct
cgctccagatccccgggccgccgacgccaccgcagccgctccagctccaactcctcccgt
tag
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