Polyodon spathula (Mississippi paddlefish): 121331224
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Entry
121331224 CDS
T07273
Name
(RefSeq) MHC class II transactivator-like isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
pspa01001
]
121331224
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
pspa04054
]
121331224
Enzymes [BR:
pspa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
121331224
Protein kinases [BR:
pspa01001
]
Serine/threonine kinases: Other
TAF1 family
121331224
Pattern recognition receptors [BR:
pspa04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
121331224
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_8
LRR_14
NB-ARC
NPHP3_N
nSTAND_NTPase5
AAA_16
WHD_NOD2
RsgA_GTPase
ABC_tran
Ploopntkinase3
nSTAND6
nSTAND3
AAA_25
Motif
Other DBs
NCBI-GeneID:
121331224
NCBI-ProteinID:
XP_041134407
LinkDB
All DBs
Position
18:complement(478817..495157)
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AA seq
1168 aa
AA seq
DB search
MAAAIGAEDPSMELSVLGEHSFLSLLYSDTLLGDISLGFPEGPFPCDADGNQLSLDSPNI
FDYMMVPNDRILSPTPFEYNENIEKILKFLEEDQQENLGEELEMTLSEPENTCQDPAKST
QYHKRDLNPADANSADTMKPKRQKRGPRANRALEKKKRGWRKSCRHDQGEAQRGIPASRP
GVHIDLPIEKGVASSPAHPVHGFVTFTLPISSLSAAGNTTLTAGGSLATTPAPIAFQVIQ
NFTAPQQVFNIPVANAVHPGGPTFVIVPAAPVSSPRAAGTPSSPVAGTVVDAAVARHPAS
PSSPASPSAVSVNRSSSPDSLPSTQPTTTDAATSPCRGSLRSLKTPAKPKSVEEFKESLR
SYLLDTCQFMCAEDQVSLESLHIDVPLIQRQIKIKTGKNANKCLEKELIIFDVAERRRAE
IPLSQIFHPNGERPKDTRVIALLGKAGLGKSTLIQKLCQDWSRGHFQQFELVFWFACKRL
NLSGKRFGLRNLLFSCFAALPPANANEVFRYLLRNPEKVLIIFDGFDDFQDCEGLLHSPA
TSSSKEIYSIKDLFSGLFQKKLLIGSTVLVTARPKEKFNQFLGKVDKIVELSGFTPEHIE
LYMTRYFKGTSYCDGAWKKVQNNGFLFSLCSTPLICRLVCFLLEHYDMNKDLPSTLTGLY
CHVFYHKMHVNAYAAGPVNRKQKQNVPDLGVLAWEGVQEHKCLLNPRDLSSEELKELGLS
SGILSPHPVSECGEEDDFSLGFVHLITQNFLGALHLILAKNINGKSLVKQVLLEKKKKKP
EEDWLDMLRRFLAGLLFQPAECSYLDCLSAKAVVSKKDALSEYLKKIKPSDLNPNRLLEL
CHCVYETGNTGLMKHMVSKLPAELSFRGTPLSLPDVFVLQHLLNKTRRAFALDLHETGID
LGGLKQLVGQKSVTSFRASISDTISLWEHLHQTGEHGLLKDSISKFTINPFKASRISDVE
HLCLLVQIYQERKLPSCDSETGPGNEIFEIPAVEGLQKLEFALGPVYGSVGFLKLVEILP
AFQWLQHLDLEALTDNKIGDTGVERLTEAFPALSSLETLNLSQNYIGDRGAERLAQSLPS
LVSLKQLSLYSNLIGDRGAENMARALPEMKSLTELDVKYNKITDVGAQKLTESLKSCLWI
KSLAMWNQSIPHGVLEHLKQQDSRINLL
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgctattggagccgaggatccaagcatggaactctctgtcctgggggagcac
agcttcctgagcctgctgtacagcgacacactgctgggggacatttcactcgggttccct
gagggaccctttccctgcgatgctgatggtaaccagctctctctggattctcccaacatt
ttcgactacatgatggtgcccaacgacagaatcctctctccgaccccttttgagtacaac
gaaaacattgaaaaaatattgaagtttttagaggaagaccagcaagagaatttgggggaa
gaattggagatgacactttcagaaccggaaaacacatgccaggaccccgcgaaaagcacc
caatatcacaagagagacctgaacccagctgatgccaactctgcggatacgatgaaaccg
aagcgccagaaaagaggtcccagagcaaaccgggcgcttgagaaaaagaagagaggctgg
aggaagagctgccgacacgaccagggagaagcacagagaggtatcccagcaagcaggcct
ggggtccacattgaccttcccattgagaagggagtagcgagttctcctgcacaccctgtc
cacgggtttgtcactttcacgctccccatctccagcctctctgccgctggaaacactaca
ctcactgctggaggctctttggccactacccctgcacccatagccttccaggtgattcag
aacttcaccgcccctcagcaggtcttcaatatccccgtcgccaacgctgtacaccctggg
ggcccgacgtttgtgattgtgcctgctgctccagtatcctctcccagggctgcaggaact
cccagctcccccgtcgcaggtactgtcgtcgatgctgctgtcgccaggcaccctgccagc
ccctcctctcccgctagcccctctgctgtgtctgtgaacagatcctcttctccagactct
ctccccagcacccagcccaccactaccgatgcagcaacgtccccctgcagagggtcgctt
cggtccctgaagactcctgcgaaacccaagtctgttgaagagtttaaagagtccctaaga
agttacctgctcgacacctgccagttcatgtgtgcggaggatcaagtgtctctggagtct
cttcacattgacgtgcccttgatccagaggcagataaagataaaaacggggaagaacgcc
aacaagtgtctggagaaggaactgatcatcttcgacgtagcggagaggaggagagccgaa
atccccctgagccagatattccaccccaacggggagaggccgaaagacaccagagtgatt
gctttgctgggaaaggccgggctgggtaaaagtacactcatccagaagctttgccaggac
tggtcccgggggcacttccagcagtttgagttggtcttctggttcgcgtgcaagaggctg
aatctgtccgggaagcgcttcgggttgaggaacctgctcttcagctgctttgcggcactg
cccccggccaacgccaatgaggtcttcagatacctgcttcgcaaccctgagaaggtcctg
atcatattcgatggcttcgacgacttccaggattgcgaaggcctccttcattcccctgcc
accagctcctccaaggagatctacagcatcaaggatttgttttcgggtctctttcagaag
aaactgctcatcggaagcacggtactggtcactgccagacccaaagaaaagttcaaccag
ttcttgggcaaggtggacaagatagttgagctcagcggcttcacccctgaacacattgag
ctgtacatgaccagatacttcaagggcacttcgtattgtgacggcgcgtggaagaaggtc
cagaacaacgggtttctctttagtttgtgctctaccccgctgatatgcaggttagtgtgc
ttcctccttgaacactatgacatgaacaaagacttgccgtccacgctcacgggactctac
tgccacgtgttctaccacaagatgcacgtgaatgcgtacgcggcaggtcctgtgaacagg
aagcagaagcagaatgtccctgatctgggcgtcctagcctgggaaggggttcaggagcac
aagtgcctcctgaacccaagggacctatcatccgaggagctgaaggaactcggtctgagc
agcgggatcctgagccctcacccagtgagcgaatgcggggaggaggacgacttcagcctt
gggttcgttcatttgatcacacagaatttcctgggggctctgcacctgatcttggccaaa
aacatcaatggcaaaagcctggtgaagcaggtcctcctggagaagaaaaagaagaagcct
gaggaagactggctggacatgctgcgcaggttcctggcggggctgctgtttcaacctgca
gagtgttcctatctggactgcttgtctgccaaggctgtagtgtccaagaaagacgctctt
tctgaatacctgaagaagatcaaacccagcgatctgaaccctaacaggctgcttgagctg
tgccactgtgtctacgagacgggcaacacgggcctcatgaagcacatggtctccaagctc
ccggcagagctctccttcaggggcacacctctctccctgcccgacgtgtttgtactgcag
catctcctgaacaaaaccagaagagccttcgccctggaccttcacgagacgggcattgac
ctcggtggactcaaacaactggtggggcagaagagcgtaacgtcattcagggcttctata
tcagatacaataagcctttgggagcacctgcaccagactggggagcatggtcttttaaag
gactccatctccaagttcactatcaaccctttcaaagcctcgcggatcagtgatgttgag
cacctctgtctcctcgtgcagatctaccaggagagaaagctgccttcatgtgactcagag
actgggcctggcaatgagatctttgagatcccggccgtcgagggactccagaagctagaa
tttgcgctcggtcctgtttacggatctgtggggtttttaaagctggtggagatccttcct
gcatttcagtggctccagcacctggaccttgaagctctgaccgataacaaaatcggggac
acaggagtggagaggctgacggaggcgttccctgctttatcatcgctggagacgctcaac
ctgtcccagaactacattggagatcgcggagctgagaggctggcacagtctcttccttcc
ctcgtgtcactgaagcagctcagcttgtacagtaatctgattggggatcgtggagcagag
aacatggccagggcactcccagaaatgaagtctcttaccgaactcgacgtgaaatataac
aagatcacggacgtgggggcgcagaaactgaccgagagtctgaagagctgtctgtggata
aagagcttggcaatgtggaatcagtccatcccacatggagttttggaacacctgaaacaa
caagattctagaatcaacctgctttag
DBGET
integrated database retrieval system
