KEGG   Polyodon spathula (Mississippi paddlefish): 121331246
Entry
121331246         CDS       T07273                                 
Name
(RefSeq) E3 ubiquitin-protein ligase RING2-like isoform X1
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
pspa  Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:pspa00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    121331246
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pspa04121]
    121331246
   03036 Chromosome and associated proteins [BR:pspa03036]
    121331246
Enzymes [BR:pspa01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     121331246
Ubiquitin system [BR:pspa04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    121331246
Chromosome and associated proteins [BR:pspa03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     121331246
    Noncanonical PRC1 (PRC1.1)
     121331246
    Noncanonical PRC1 (PRC1.3/1.5)
     121331246
    Noncanonical PRC1 (PRC1.6)
     121331246
SSDB
Motif
Pfam: RAWUL zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-C3HC4_3 zf-RING_UBOX zf-C3HC4_4 RING_XB3-XBAT31 zf-Nse zf-RING_5 zf-RING_4 zf-RING_6 zf-rbx1 zf-UDP TRAF3_RING SpoU_sub_bind zf-C3HC4_5 zf-ANAPC11
Other DBs
NCBI-GeneID: 121331246
NCBI-ProteinID: XP_041134445
LinkDB
Position
18:25175718..25183268
AA seq 342 aa
MTQAVQTNGVQPLSKTWELSLYELQRTPQEAITDGLEIAVSPRSLHSELMCPICLDMLKN
TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRHDPNFDALISKIYPSRDEY
EAHQERVLARISKHNNQQALSHSIEEGLKIQALNRLQRGKKHQIENGSGAEDNGDSSHCS
NASVHSNQEAGPSIKRTKTSDDSGLDMDNTTENVAGDLALDGASEIELVFRPHPTLMEKD
DVTQTSIRFVPRYIKTSGNATVDHLSKYLAVRLALEELRKSGDANPINVEAASEKQYTIY
IPTTSGQFTVLNGSFSLELVSEKYWKVNKPMELYFAHTKEHK
NT seq 1029 nt   +upstreamnt  +downstreamnt
atgactcaggccgtgcagactaacggggtacagcccctgagtaagacatgggaactcagc
ctgtacgaactacagcggactccccaggaggcgatcacagacgggctggagattgctgtc
tccccgagaagcctccacagtgagctgatgtgtccgatttgcttggacatgctgaagaac
accatgaccaccaaggagtgcctgcaccgcttctgtgccgactgcatcatcacagctctg
cgcagcgggaacaaggagtgcccaacttgccgaaagaagctggtgtcgaagcgctctctg
cgccatgatccgaacttcgatgcgctgatcagcaagatctacccgagcagagatgagtac
gaggcccaccaggagcgcgtcctggcccggatcagcaaacacaacaaccagcaggcattg
agccacagcattgaggagggcctcaagatccaggccctgaaccggctccagagagggaag
aagcaccagattgagaatggcagtggggcagaggacaatggtgacagctctcactgcagc
aatgcctcggtacacagcaatcaggaggcggggcccagcatcaagcggacaaagacctcc
gatgactcgggcctcgacatggacaacaccaccgagaacgtggcgggggacctggcgctg
gacggggccagcgagattgagcttgtttttcggccgcaccccacactgatggagaaggat
gatgtcacacagaccagtattcggtttgtacccaggtacattaagacatcgggaaatgcc
acagtggaccacctttcaaaatacctggcagtacggctggccctggaggagcttcgcaaa
agcggggatgccaacccaattaatgtggaggcagcgagtgagaagcagtacactatctac
attcctaccaccagtggccagttcacagtgctgaacgggtccttctcgttggagttggtc
agtgagaagtactggaaggtcaacaaacctatggagttgtacttcgcacacaccaaggag
cacaaatag

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