Pseudogemmatithrix spongiicola: Strain318_000011
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Entry
Strain318_000011 CDS
T10301
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pspc Pseudogemmatithrix spongiicola
Pathway
pspc03030
DNA replication
pspc03410
Base excision repair
pspc03420
Nucleotide excision repair
pspc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pspc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Strain318_000011 (polA)
03410 Base excision repair
Strain318_000011 (polA)
03420 Nucleotide excision repair
Strain318_000011 (polA)
03440 Homologous recombination
Strain318_000011 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pspc03032
]
Strain318_000011 (polA)
03400 DNA repair and recombination proteins [BR:
pspc03400
]
Strain318_000011 (polA)
Enzymes [BR:
pspc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Strain318_000011 (polA)
DNA replication proteins [BR:
pspc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Strain318_000011 (polA)
DNA repair and recombination proteins [BR:
pspc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Strain318_000011 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Strain318_000011 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_5
MinC_N
Motif
Other DBs
NCBI-ProteinID:
WKW13690
UniProt:
A0AA49Q3D2
LinkDB
All DBs
Position
9639..12614
Genome browser
AA seq
991 aa
AA seq
DB search
MSTPGRPRLYLIDGYALIYRSFHALGGGVPLRNARGENTGMAKGVSEFLRRLIEKHKPEY
LGWVNDAGSSGREELLEAYKANRVALPEEEQQDFDTGVERVHQLLAGYRIPTLELDGFEA
DDVIATLAPQGVAAGLEVCVVSGDKDLLQLVQPGVWVLNPWHGPPGRTTEKWYGVDNAHE
RLGVPAERVIDYLALVGDTADNVPGVKGIGDKGALALIEKWGTVENMLAHVDEIEPTRAR
NALKNAEAEARLSKELVTLKRDLPIALDLSSLTLDPPDWVALRDLFVELEFGTAARTAAV
NAEAAGAAPNAGLERAAEAAVDVEGHMVSARAARAAVPGTPAPVATDYRVADTPALLAEA
IAEARAAGVIAVDTETVLDAGAPPIITPMRANLVAISMATAPGKAWYFPLAHRMPGSAQG
GLALGDEPAPAKSKASAAPASIAARLLAEGPQPVVNLPPLESEPMAPLRALLEDPGVKKT
AHNVKYDLLVFRRAGITLRGVDFDSMLASYVLDPSRRSHAIDALAVEFLGVAMTGYDELC
GKGKQQMPYDEVPIAAARDYSCADSDIALRLRELFLPRLAEQGATALLHEVELPLVDVLA
EMEWTGITIDVPWFRSLKTRFEAARLDLEKQIHAEAGESFNVNSNPQLRTILFEKLGLPI
KKKTATGPSTDASVLQELADEGHALPQLLMEYRELAKLESTYLDTLPGLVNPHTGRLHTS
YAQTVASTGRLASHDPNLQNIPIRRELGKDIRRGFIPRAGWRLLAADYSQVELRLLAHLS
GDPAFVAAFEAGGDIHRQTASVIFGVPLEAVTSEMRARAKTINFATIYGQGAHALSRQLK
IDHAEAKAFIETYFERFAGVRTWLDTAVAEARERGYVETIFKRRRYIPEIKDRNFNTRAF
GERLAQNSPIQGSAADLIKKAMIRIHHALGEAKHTARMLLQVHDELVFECPPDEETALRA
LVDREMTGAVQLRVPLVVDIGSGENWLLAKA
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgagcactcccggacgtccgcgcctctatctgatcgatggctacgcgctgatctaccgc
tcgttccacgccctcgggggcggcgtcccgctgcgcaatgcgcgcggcgagaacaccggc
atggccaagggcgtcagcgagtttctccgccgcctcatcgagaagcacaagccggagtac
ctcggctgggtgaacgacgccggctcctccggccgcgaggaactgctcgaggcgtacaag
gccaaccgcgtcgcgctgcccgaggaagagcagcaggatttcgataccggcgtcgagcgc
gtgcaccagctgctcgccggctatcgcatccccacgctcgaactcgatggcttcgaagcg
gacgacgtcatcgcgacgcttgcgccgcagggcgtggcggccggactcgaggtttgcgtg
gtctcgggcgacaaggacctgctgcagctcgtccagcccggcgtctgggtgttgaatccg
tggcacggcccgccggggcgcacgaccgagaagtggtacggcgtcgacaacgcacacgag
cgcctcggcgtcccggccgagcgcgtcatcgactacctcgcgcttgtcggcgatacggcc
gacaacgtccctggcgtaaagggcatcggcgacaagggcgcgctcgcactcatcgagaag
tggggcacggtcgagaacatgctggcgcacgtggacgagatcgaacccacgcgcgcgcgc
aacgcgctgaagaacgcggaagccgaggcgcggctctcgaaggaactcgtcacgctcaag
cgcgatctcccgatcgccctcgacctttcgtcgctcacgctcgatccccctgactgggtc
gcgttgcgcgacctgttcgtggagctcgagttcggcacggcggcgcgcacggctgccgtg
aatgccgaagctgccggcgcggcgccgaacgcggggctcgagcgcgcggcggaagccgcg
gtggacgtggaagggcacatggtgagtgcgcgcgcggcgcgggccgccgtgcccggcaca
ccggcgcccgtggcgaccgactatcgcgtggccgacacaccggcgctgctggccgaggcc
atcgccgaggcgcgcgccgctggcgtcatcgccgtcgacaccgagacggtgctcgatgcg
ggagcgccgccgatcatcacgccgatgcgcgcgaatctcgtcgcgatctccatggcgacg
gcgcccggcaaggcgtggtacttcccgctcgcgcaccgcatgcccggcagcgcacagggt
ggcctcgcgctgggcgatgagcccgcaccagccaagtccaaggccagcgccgcacccgcc
agcatcgccgcgcgcctgctcgccgagggaccacagccggtggtgaatctgccgccgctg
gagagcgagccgatggccccgctccgcgcgttgctcgaggacccgggcgtcaagaagacg
gcgcacaacgtgaagtacgacttgctggtcttccgccgcgcgggcatcacgctgcgcggc
gtcgacttcgattccatgctggcgagttatgtcctcgacccgagccgccgctcgcacgcc
atcgacgcgctcgcggtcgagttcctcggcgtggccatgacgggctacgacgaactctgc
ggcaaggggaagcagcagatgccgtacgacgaagtgccgatcgcggcggcgcgcgactac
tcctgtgccgacagcgacatcgcgctgcggctgcgcgagctgttcctgccgcggctcgcc
gagcagggcgcaacggcgctgctgcacgaggtcgagctcccgctcgtggatgtgctcgcc
gagatggagtggaccggcatcaccatcgacgtgccgtggttccggtcgctcaagacgcgc
ttcgaggcggcgcgcctcgacctcgagaagcagatccacgccgaagccggcgagagcttc
aacgtcaacagcaacccgcagctgcggacgatcctcttcgagaagctcggcctgcccatc
aagaagaagaccgccacaggcccgagcaccgacgccagcgtgctgcaggagctcgccgac
gaggggcacgcgctcccgcagctgctcatggagtaccgcgagctggcgaagctggagagc
acgtatctcgacacgctgcccggactcgtcaatccgcatacgggccgtctccatacctcg
tatgcgcagacggtcgcgagtaccggccgactcgcgtcgcacgacccgaacctgcagaac
atcccgattcgccgggagctcgggaaagacatccgccgagggttcatcccccgcgcgggc
tggcgcctgctcgccgccgactactcgcaggtcgaactgcgcctgctggcgcatctcagc
ggggacccggccttcgtcgcggccttcgaggccggcggtgacatccaccgccagacggcg
agcgtcatcttcggcgtgccgctcgaggccgtcacgtcagagatgcgcgcacgcgccaag
accatcaacttcgcgaccatctacggccaaggcgcacacgcactctcccgccagctcaag
atcgatcacgccgaggcgaaggccttcatcgagacgtacttcgagcggtttgccggcgtg
cgcacctggctcgataccgcggtggccgaggcccgcgagcgcggatacgtcgagaccatc
ttcaagcgccgacgctacatccccgagatcaaggaccggaacttcaacacccgggccttc
ggcgaacgtctcgcacagaactcgccgatccagggttcggcggcggacctcatcaagaag
gcgatgattcgcatccatcacgcgctgggggaggcgaagcatacggcccgcatgttgctc
caggtgcacgacgaactggtgttcgagtgtccgcctgacgaggagacggcgctccgcgcc
ttggtcgatcgcgagatgaccggtgccgtgcagctccgcgtgccgctggtggtggacatc
gggagcggcgagaactggctcctggctaaggcctaa
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