Pseudogemmatithrix spongiicola: Strain318_000078
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Entry
Strain318_000078 CDS
T10301
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
pspc Pseudogemmatithrix spongiicola
Brite
KEGG Orthology (KO) [BR:
pspc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspc03019
]
Strain318_000078
Messenger RNA biogenesis [BR:
pspc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Strain318_000078
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Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
HDOD
TraI_2
Motif
Other DBs
NCBI-ProteinID:
WKW13755
UniProt:
A0AA49JRW8
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All DBs
Position
complement(71457..72437)
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AA seq
326 aa
AA seq
DB search
MAPLEIPKLAVGDRVQHELLVREREDKVTKAGDPFLTLKLGNATGVLGANVWKEMVPQVQ
GVRPGQVVQVIGVVEEYAGRRQLKLTAPPRVVPMGGADIEQFLPRITVPEERLWAKIDAW
RAEMHGPLRRAVDLFFADESFRAEFARTPGATRGHHALVGGLLLHTCEVADIARASAQTM
GGNVTLVTAGALLHDIGKTKTYTVDLAGFDYTRAGMLLQHIVLGSLMLEERLRTLPPQDQ
LSDEQRLELHHFIQSHHGQLEFGAAVRPMTLEAEILHFADNTSAKGNDFTEAVEDAELFP
SAELEFSAKRSWRLERRVWKRSHRWD
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccctcgagattcccaagctggcggtcggtgaccgcgtgcagcacgaactgctc
gtgcgcgaacgcgaggacaaggtcaccaaggctggcgatcccttcctgaccctcaagctc
ggcaacgccaccggcgtactcggcgccaacgtgtggaaggagatggtgccgcaggtgcag
ggcgtgcggcccggtcaggtcgtgcaggtcatcggcgtcgtcgaggagtacgcggggcgg
cggcagctcaagctcaccgcgccgccgcgtgtcgtcccgatgggcggcgccgacatcgag
cagttcctgccgcggatcaccgtacccgaggaacggctctgggccaagatcgacgcctgg
cgcgccgagatgcacgggcccctgcggcgcgcggtcgatctcttcttcgccgacgaatcg
ttccgcgccgagttcgcccgtacgccgggcgcgacgcgtggccaccatgcgctcgtgggc
ggactgctgttgcacacctgcgaagtcgccgacatcgcgcgcgcctccgcgcagaccatg
ggtggcaacgtcacgctggtcaccgccggcgcgctgctgcacgacatcggcaagaccaag
acctacacggtggatctggcgggcttcgactacacccgcgccggcatgctgctccagcac
atcgtgctgggctcgctcatgctcgaagagcgcttgcgcacgctacctccgcaggatcag
ctcagcgacgaacagcgtctcgagctgcatcacttcatccagtcgcatcatggccagctc
gagttcggcgcggccgtgcgcccgatgacgctcgaggccgagatcctgcacttcgccgac
aacacctcggcgaagggcaacgatttcaccgaggcggtggaggatgccgagttgtttccc
agcgccgagctggagttctcagccaagcgcagctggcgactcgagcgacgggtctggaag
cgcagccaccgctgggactga
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