Pseudogemmatithrix spongiicola: Strain318_000301
Help
Entry
Strain318_000301 CDS
T10301
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pspc Pseudogemmatithrix spongiicola
Pathway
pspc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Strain318_000301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspc03019
]
Strain318_000301
03009 Ribosome biogenesis [BR:
pspc03009
]
Strain318_000301
Enzymes [BR:
pspc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Strain318_000301
Messenger RNA biogenesis [BR:
pspc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Strain318_000301
Ribosome biogenesis [BR:
pspc03009
]
Prokaryotic type
rRNA helicases
Strain318_000301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
AAA_22
Cuticle_1
WSD
Motif
Other DBs
NCBI-ProteinID:
WKW13976
UniProt:
A0AA49Q6N8
LinkDB
All DBs
Position
326590..328269
Genome browser
AA seq
559 aa
AA seq
DB search
MTNRASDPMPAAGFASLGLDARVLAALTALGYEEPTPIQRAAIPLQIAGRDVLAQAATGT
GKTAAFALPLLQHLRTDAPPRERTSALVLVPTRELAMQVAEAIYRYGKSMGVHAVPVYGG
TAIDGQIRQLKRGVDIVIATPGRALDHIRRKTVHLQGIRTVVLDEADEMLDMGFADDLEA
ILAETPAEKQVALFSATLAPRIMAIAKSHLRNPELISIEPEKLKAGKAAKVRQVAYIVPR
AHKMAALGRILDVEQPESAIVFCRTRTEVDELTETMNARGYAAEALHGGLSQDQRDRVMK
RFRGKTTDLLIATDVAARGLDVSHVTHVVNYDVPNASEAYVHRIGRTGRAGREGTAITLA
EPREHRLLKSFERATGRPVEVAPVPTVADLKAARVEQVQEKLRATILDGGLEDWRRIVAG
MATEFDPMDIAAAALKQGATPADEETEIPAGPPAREKHPARAREDVKKARTIARGAKGGG
MTKLYVGAGRKLKVRPGDLVGAIANEAGVDAATLGTITIFDRHSIVEVPAAAADDVLRAM
AKATIKGKKILVRRDREGS
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgacaaatcgcgcgtccgaccccatgcctgccgccggattcgcgtccctcggcctcgat
gcccgcgtcctcgcggcgctcaccgcccttgggtacgaggagcccacgcccatccagcgg
gcggccatcccgctgcagatcgccggccgcgacgtcttggcgcaagcggccaccggtacc
ggcaagacggcggcgttcgcgctgccgctgctccagcacctgcgcaccgatgcgccgcca
cgcgaacggaccagcgcactggtgctggtccctacgcgcgagctggctatgcaggttgca
gaggcgatctaccgctacggcaagtccatgggcgtgcacgcggtgccggtctatggcggc
acggcgatcgacggccagatccgccagctcaagcgcggcgtggacatcgtgatcgccacg
ccggggcgcgcgctggaccacatccggcgcaagaccgtgcacctgcaggggatccgcacg
gtggtgctcgacgaagccgatgagatgctcgatatgggctttgccgacgacctcgaggcg
atcctcgccgagacgcccgccgagaagcaggtggcgctgttctcggccacgctggcgccg
cgcatcatggcgatcgccaagtcgcatctgcgcaatccggaactgatcagcatcgagccg
gagaagctcaaggccggcaaggcggcgaaggtgcggcaggtggcctacatcgtgccgcgg
gcgcacaagatggcggccctgggtcgcatcctcgacgtggagcagccggagagcgcgatc
gtgttctgccggacgcgcaccgaggtggacgaactcaccgagacgatgaacgcgcgcggc
tatgcggccgaggcgctgcatggcggcttgagccaggaccagcgcgaccgcgtgatgaag
cgcttccggggcaagacgacggacctgttgatcgcgacggacgtggcggcgcgcggcctg
gacgtgtcgcacgtgacgcacgtggtcaactacgacgtgccgaacgcgagcgaggcgtat
gtgcatcgcatcggccgcacgggccgtgcggggcgcgaggggacggcgatcacgctggcg
gagccgcgcgagcatcgcttgctcaagagcttcgagcgcgcgacgggtcgtccggtggag
gtcgccccggtgccgacggtggcggacctgaaggcggcgcgtgtggagcaggtgcaggag
aagctgcgtgcgacgatcctcgacggcgggctggaggattggcggcgcatcgtggcgggc
atggcgacggagttcgatccgatggatatcgccgcggcggcgttgaagcagggggccacg
ccggcggacgaggagaccgagattccggcggggccgccggcacgcgagaagcatccggcg
cgcgcgcgagaggacgtgaagaaggcgcgcacgatcgcccgcggtgccaagggtggcggg
atgacgaagctctacgtgggtgccggccgcaagctgaaggtgcggccgggcgacctcgtg
ggcgcgatcgccaacgaagcgggcgtcgatgccgcgacgctcggcacgatcacgatcttc
gatcggcacagcatcgtcgaggtgccggccgcggcggccgatgacgtgctgcgcgcgatg
gcgaaggcgacgatcaagggcaagaagatcctcgtgcgccgggatcgcgaaggcagctga
DBGET
integrated database retrieval system
