Pseudogemmatithrix spongiicola: Strain318_000514
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Entry
Strain318_000514 CDS
T10301
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pspc Pseudogemmatithrix spongiicola
Pathway
pspc03030
DNA replication
pspc03430
Mismatch repair
pspc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pspc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Strain318_000514 (dnaE)
03430 Mismatch repair
Strain318_000514 (dnaE)
03440 Homologous recombination
Strain318_000514 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pspc03032
]
Strain318_000514 (dnaE)
03400 DNA repair and recombination proteins [BR:
pspc03400
]
Strain318_000514 (dnaE)
Enzymes [BR:
pspc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Strain318_000514 (dnaE)
DNA replication proteins [BR:
pspc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Strain318_000514 (dnaE)
DNA repair and recombination proteins [BR:
pspc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Strain318_000514 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
PHP_C
Motif
Other DBs
NCBI-ProteinID:
WKW14183
UniProt:
A0AA49JSS3
LinkDB
All DBs
Position
complement(569939..573427)
Genome browser
AA seq
1162 aa
AA seq
DB search
MGFVHLHTHSEYSLLDGANRIDDLIARAQEFEQPALAITDHGNLHAAWEFQEKAKKAKLK
PIIGMEAYVARGDRRDRSRAAAGEKNYYHLVLLARDLEGYRNLVKLSSLGYTEGFYGKPR
VDRELLARHNSGLIVSSACMAGEVAQHLLEDRYDEAKAVAAWYAEVFKDRYHLEVQAHEA
GEQQKLNKLIFKLAEEMNLPVVATNDAHFLKAEDHDAHDVLLCIGLKKDRLDADRMRYDR
GLYFKSAPEIQAHFKGRTDVLENTLKIADEVNVVFDKKYYVPSFPLPAGVSSENDFLVKL
ATDGAKQRYGDPLPADVKERLDYELGVITKTGYAGYFLITADFIKAARDRGIPVGPGRGS
AAGSLVAYATGITNVCPLKFDLLFERFLNPERVSMPDIDVDFCEERRGEVIEYVRDKYGR
ESVGQIITFGTLKSRACIKDVGRVLGFTPAETDAIAKLIPNAPNFSLTVAEAIEKVPEVR
KLYEQDERHAQLFDFAISLEGLSRHAGVHAAGIVIAPGPLEEYVPVCTQESKGSGSGNDE
RVVVTQYDMVALEKAGMLKMDFLGLTTLTILTDAVKAIKERRGVDIDLDALALDDEPTYR
MLRAGRTAGVFQFESPLATEMVRAMRADRFDDLVASNALMRPGPLDAGMHKVYQRRKKGE
EPVTYQLPELEEILAPTYGVITYQEQVMRIAQRLAGISLAEADVLRKAVGKKDAELIKAE
LGKFSQKAIANGFPAKVIEDISAQIETFGRYGFNKSHSVAYSVLSYHTAYLKAHYAPEFM
AAVLSASIGDTDAVVKYINEARDLGLEILAPDVNESGWKFTVVGDTRIRFGLGAIRNVGH
SAAESIIAARSEKPFTSLYDLCERVDLRVCNKRVFEALIHAGALDNLPGHRAQFLAALDG
AMQHASLAQAEIATGQGSLFGDLGGDPSETPSAPLVPTLPNVKEFTESERLTQEKAILGF
YISGHPLEPFRAECELLATHQVNQLGTWSAESMALAGVVTSVKRQISKKSGNEFARLVVE
DFSGTAEILVFPEAWAAMSDRVQTDIPVLIKGAYGRRDQGADNPTFIVESITRLAELRAT
GQFAISLELDPAAGLPVAVMQDVRAVADAHPGSAPLELRWKGPDGSPARLRSSSLKLSTA
GPALLELRALLGPERVRLVRGS
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgggcttcgttcatctccacacccactccgaatacagtctcctcgacggcgccaaccgc
atcgacgacctgatcgcccgcgcccaggagttcgaacagcccgccctcgccatcaccgac
cacggcaatctccacgccgcctgggaattccaagagaaggccaagaaggccaagctcaag
cccatcatcggcatggaagcctacgtcgcgcgcggagaccgtcgcgaccgctcccgcgcc
gccgccggcgagaagaactactatcacctcgtcctcctcgcccgcgatctcgaaggctac
cgcaatctcgtgaagctctcctccctcggctacaccgaggggttctacggaaagccgcgc
gtcgaccgcgaactgctcgcccgccacaactccggcctcatcgtttcgtcagcctgcatg
gccggcgaggttgcccagcacctcctcgaagaccgctacgatgaagccaaggctgtcgcc
gcatggtacgccgaagtcttcaaggatcgctaccacctcgaggtccaggcccacgaggcc
ggcgaacagcagaagctcaataagctgatcttcaagctggccgaggagatgaacctcccg
gtcgtcgccacgaacgacgcgcacttcctcaaggccgaggaccacgacgcgcacgacgtg
ctgctctgcatcggcctcaagaaagatcgcctcgacgccgaccgcatgcgctacgaccgc
ggcctgtacttcaagagcgcccccgagatccaggcgcacttcaagggccgcacggacgtc
ctcgagaatacgctgaagatcgcggacgaggtcaacgtcgtcttcgacaagaagtactac
gtgccgtcgttcccgctacccgccggcgtgagcagcgagaacgacttcttggtgaagctg
gccaccgacggcgccaagcagcgctacggcgatccgctgcccgccgacgtgaaggagcgc
ctcgactacgaactcggcgtgatcacgaagaccggctacgccggctacttcctcatcacc
gcggacttcatcaaggcggcccgcgatcgcggcatccccgtcggcccgggccgcggctcc
gcggccggctcgctggtcgcctacgccacgggcatcacgaatgtgtgcccgctcaagttc
gacctgctgttcgagcgtttcctgaatccggaacgcgtctcgatgcccgacatcgacgtg
gacttctgcgaagaacgccgcggcgaagtcatcgagtacgtgcgcgacaagtacgggcgc
gagtccgtcggccagatcatcaccttcggcacgctcaagtcccgcgcctgcatcaaggac
gtcggccgtgtgctcggcttcacgccggccgagaccgacgcgatcgcgaagctcatcccc
aatgcgccgaacttctcgctcaccgtcgccgaggcgatcgagaaggtcccggaagtccgc
aagctctacgagcaggacgagcgccacgcgcagctcttcgacttcgccatctcgctcgaa
ggcctctcgcgccacgccggcgtccatgccgccggcatcgtcatcgcgccgggtccgctc
gaggagtacgtccccgtctgcacgcaggagtccaagggctccggctcgggcaacgacgag
cgcgtcgtcgtcacgcagtacgacatggtcgcgctggaaaaggcgggcatgctcaagatg
gacttcctcggcctcaccacgctcaccatcctcacggatgcggtgaaggccatcaaggag
cgccgcggcgtggacatcgacctcgacgcgctcgcgctcgatgacgagcccacgtatcgc
atgctgcgcgccggccgcaccgccggcgtgttccagttcgaatcgccgctggccaccgag
atggtccgcgccatgcgcgccgaccgcttcgacgacctggtcgcctcgaacgcgctgatg
cgccccggcccgctcgacgccggcatgcacaaggtctaccagcggcgcaagaagggcgag
gagcccgtgacctaccagctccccgagctggaagagatcctcgcgcccacctacggcgtc
atcacctaccaagaacaggtgatgcgtatcgcgcagcgtttggcgggcatctcgctcgcc
gaagccgacgtgctgcgcaaagccgtcggcaagaaggacgccgagctcatcaaggccgag
ctcggcaagttctcgcagaaggccatcgccaacggattcccggcgaaggtcatcgaggac
atctccgcgcagatcgagaccttcggccgctacggcttcaacaagtcgcactcggtcgcc
tactcggtcctctcgtaccacacggcctatctcaaggcgcactacgcgcccgagttcatg
gccgccgtgctctcggcgtccatcggggacaccgacgccgtggtgaagtacatcaacgag
gcccgcgacttaggcctcgagatcctcgcccccgacgtcaacgaatccggctggaagttc
accgtcgtcggcgacacgcgcattcgttttgggctcggcgccatccgcaacgtcggccac
tcggcggccgagagcatcatcgcggcccgcagcgagaagccgttcacctcgctctacgat
ctctgtgagcgcgtggacctgcgcgtctgcaacaagcgcgtcttcgaagcgctgatccac
gccggcgcgctcgacaacctaccgggccaccgcgcgcagttcctcgccgcgctcgatggc
gccatgcagcatgcctcgctggcgcaggcggagatcgccaccggacaaggttccttgttc
ggggacctcggcggtgatccctccgagacgccgagcgcgccgctggtgcccacgctgccc
aacgtgaaggagttcacggagagcgagcgcctcacgcaggagaaggccatcctcggcttc
tacatctccggccatccactcgagccgttccgcgccgagtgcgaactgctcgccacgcat
caggtgaaccagctgggcacctggagcgccgagtcgatggcgctggccggcgtcgtcacc
agcgtgaagcggcagatctccaagaagtccggcaacgagttcgcgcgcttggtcgtggag
gacttctccggcacagccgagatcctcgtcttccccgaggcgtgggcggccatgagcgac
cgcgtgcagacggacatcccggtgctcatcaagggcgcctacgggcgccgcgaccaaggc
gccgacaacccgacgttcatcgtcgagtccatcacgcggctcgccgaactgcgcgccacc
ggccagttcgccatctcgctggagctggatccggccgccggcttgcccgtggcggtcatg
caggacgtccgcgccgtggccgacgcccatcccggttcggccccgttggagctacgttgg
aagggtccggatgggagcccggcccgcctgcggtcgagctccctgaagctgtccaccgct
ggcccggccctgctggagctccgcgccctcctgggcccggagcgggtgcgcctcgtgcgc
gggagctga
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