Pseudogemmatithrix spongiicola: Strain318_000518
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Entry
Strain318_000518 CDS
T10301
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pspc Pseudogemmatithrix spongiicola
Pathway
pspc03420
Nucleotide excision repair
pspc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pspc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Strain318_000518
03430 Mismatch repair
Strain318_000518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspc03400
]
Strain318_000518
Enzymes [BR:
pspc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Strain318_000518
DNA repair and recombination proteins [BR:
pspc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Strain318_000518
MMR (mismatch excision repair)
Other MMR factors
Strain318_000518
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
DEAD
AAA_12
ResIII
Motif
Other DBs
NCBI-ProteinID:
WKW14187
UniProt:
A0AA49Q3X3
LinkDB
All DBs
Position
complement(577101..579182)
Genome browser
AA seq
693 aa
AA seq
DB search
MSDDLRAYPPRERTAEPRRSVDFAAELNAAQFKAATHPDGPLLIVAGAGTGKTRTLVYRV
AHLIDRGVPPSRILLLTFTRRSAQEMLARAEKLVGHASRSVHGGTFHGTAHRLLRRFGPE
GGLPGDFTILDQSDAEDLMGLSRTALGLGDKTKRFPKKETLHHVYSRHVNTDIPVGAILR
DEYPRFVQLEEEFAKVFADYTQRKQQRDLVDYDDLLLYWALLLENAPAVADKIAGLYDHI
LVDEYQDTNVLQARILKGMCRVHRNLTVVGDDAQSIYAFRGATIRNILDFPREYHGASTV
TLEENYRSTQPILDATNLLISRAEERFSKELYSRRTGGEKPWLVTAQDEQQQTRFVVDRI
LELHEQGIPLREMAVLFRAGYMSADLEIELTARNIPFDKWGGLKFLEAAHVKDVLAFLRV
LENPRDEVSWYRLLLLMPGIGEVTARNAVQSMADLAWSHESFGRFTPPPRAREAHAALVR
LLADLRAGTGDEDGRVTREIVRVRALYDDILRERYDRVEPRLSDLDQLQTIAGGYPDRAT
FLSALALEPPSATSDLGFGSDTEDDTLVLSTAHSAKGREWDAVFVIWAVDGWFPMARALG
SEDEIEEERRLMYVAMTRARNHLAVSYPLNVYDTRRGADYSLDQVSRFLDRGVRKAFQRV
TLQAVVEPAAVPDASAPPEVDLRALLRGRFGSS
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgacctccgcgcctatccgccccgcgaacgcaccgccgagccgcgacgctcg
gtggacttcgcggccgagctgaacgccgcgcagttcaaggccgccacgcaccccgacgga
ccgctgctgatcgtcgccggcgcgggcacgggcaagacgcgcacgctggtgtaccgcgtc
gcgcatctcatcgaccgcggcgtgccaccgtcgcgcatcctgctgctcaccttcacgcgg
cgctcggcacaggagatgctcgcgcgcgccgagaagctcgtcggccacgcgagccgcagc
gtgcacggcggcaccttccacggcacggcgcatcgcctgctgcggcgcttcggccccgaa
ggcggactccccggcgacttcacgatcctcgaccagtccgacgccgaggatctcatgggc
ctctcgcgcacggcactgggcttgggcgacaagaccaagcgcttcccgaagaaggaaacg
ctgcaccacgtgtactcgcggcatgtcaacaccgacatccccgtcggtgccatcctgcgc
gacgagtacccgcgcttcgtccagctcgaagaggagttcgcgaaggtcttcgccgactac
acgcagcgcaagcagcagcgcgacctcgtggattacgatgacttgctgctctactgggcg
ctgctgctggagaacgcccccgccgtcgccgacaagatcgccggactctacgaccacatc
ctggtcgatgagtaccaggacaccaacgtgctgcaggcgcgcatcctcaagggcatgtgc
cgcgtgcaccgcaacctcacggtcgtcggcgacgatgcgcagagcatctatgccttccgc
ggcgccacgatccgcaacatcctcgacttcccgcgcgagtaccacggcgcgagcaccgtc
accctcgaggagaactaccgcagcacgcagcccatcctcgacgcgacgaacctgctgatc
agccgcgcggaagagcgcttcagcaaggagctgtattcgcggcgcacgggtggcgagaag
ccttggctggtcaccgcgcaggacgagcagcagcagacgcgcttcgtcgtcgaccgcatc
ctcgagctgcacgagcaaggcatcccgctccgcgaaatggccgtgctcttccgcgcgggg
tacatgagcgccgacctcgagatcgagctcacggcgcgcaacattcccttcgacaagtgg
ggcgggctcaagttcctcgaagccgcgcacgtgaaggacgtgctggccttcctccgcgtg
ctcgagaacccgcgcgacgaggtcagctggtaccgcctgctgctgctcatgcctggcatc
ggcgaggtcacggcgcgcaatgcggtgcagtccatggcggatctcgcgtggagccacgag
tccttcggccgcttcacgccgccaccgcgcgcgcgcgaggcacatgcggcactcgtacgg
ctactcgccgatctgcgcgccggcacgggcgacgaggacggccgcgtcacccgcgagatc
gtccgcgtgcgcgcgctctacgacgacatcttgcgcgagcgctacgaccgcgtcgagccg
cggctctccgacctcgaccagctgcagacgatcgccggcggctatcccgaccgcgccacg
ttcctgagcgcgctcgccctcgagccgccgagcgcgaccagcgacctgggcttcggcagc
gacaccgaggacgacaccctcgtgctctccaccgcgcacagcgccaaaggccgcgagtgg
gacgccgtgttcgtcatctgggccgtggacggctggttcccgatggcccgcgcactcggc
agcgaagacgagatcgaagaggagcgccgcctcatgtacgtcgcgatgacgcgggcgcgc
aatcatctcgcggtgagctatccgctcaatgtgtacgacacgcggcgcggggcggactat
tcactcgaccaggtaagccgcttcctcgaccgcggcgtgcgcaaggcgttccagcgcgtg
acgctgcaggcagtcgtggagcccgcggcggtgcccgatgcatccgcgccgccggaagtg
gacctgagggccctgctacggggacgcttcggctcgtcctga
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