Pseudogemmatithrix spongiicola: Strain318_000671
Help
Entry
Strain318_000671 CDS
T10301
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pspc Pseudogemmatithrix spongiicola
Pathway
pspc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pspc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Strain318_000671 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspc03021
]
Strain318_000671 (rpoC)
03400 DNA repair and recombination proteins [BR:
pspc03400
]
Strain318_000671 (rpoC)
Enzymes [BR:
pspc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Strain318_000671 (rpoC)
Transcription machinery [BR:
pspc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Strain318_000671 (rpoC)
DNA repair and recombination proteins [BR:
pspc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Strain318_000671 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Biotin_lipoyl_2
DUF7567
Motif
Other DBs
NCBI-ProteinID:
WKW14331
UniProt:
A0AA49JT21
LinkDB
All DBs
Position
750925..755286
Genome browser
AA seq
1453 aa
AA seq
DB search
MIDFRSVREKSASAFDYIQVRIASPEEIRGPRDPKERERLEMAGLRSWWSWGEVTKPETI
NYRSFKPEKDGLFCEKIFGPVKDWECHCGKYKRIRYRGVICDRCGVEVTLSKVRRDRMGH
IELAVPVAHIWFFKTLPSPMGNLLDLTLRDLEKVIYYANYVVIDPGAQESVPDATESDKF
VRVEQNMLLSEDQFLYLKAKAKEDGDSAFKADIGAPAVRELLQRLDIDKTAEELRASVVT
ETSQHKKKAQLKRLKIVDAFRNSGDHSGMRNKPEWMIMDVVPVIPPDLRPLVPLDGGRFA
TSDLNDLYRRVINRNNRLTKLISHRAPEVILRNEKRMLQEAVDALFDNGRRSKAIRGRGK
RPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKAMALELFKPFI
IHKLVEKGIAETVKRAKKIVERESSEVFEILEEIIRDHPVLLNRAPTLHRLGIQAFEPVL
VEGKAIRIHPLVCAAFNADFDGDQMAVHVPLSYEAQLEARVLMLSSNNILKPSDGRPVAE
PSQDIVLGCYFATKAPADFEALQKDAKAAAKLRSFGSAAEVEMALALHQIHVQTPVRYLA
RTNEGGKAWTVTTAGRVLFDGIVPAALPFQNRDMKKKALGELVFESYRKAGLAETVQFLD
RLKEFGFRNATRGGVSIAIEDLEIPAEKETLLEEATARVNRFQKAYQTGNITNGERYNKV
IDTWTHANNDIADAMVKRMRESQGGFNPVFMMFDSGSRGSRDQIRQLAGMRGLMAKPQKK
LTGGIGEIIENPIKSNFREGLSVLEYFSSTHGARKGLADTALKTADAGYLTRRLCDVAQD
VVITEEDCGTVMGLEIGALKEGEDIIEPLSERIVGTVAADDIVDPQLLDEAGRPQLLVEA
GQMILEEAAAQIEEAGIETVKIRSVLTCEAKRGLCRMCYGRNLATMQMVDLGEAVGIISA
QSIGEPGTQLTLRTFHIGGTAARIAEQTARKSKVAGVVEFGDRLVKVTNPEGQEIVTSYE
GELFIRATRDKHAPVMARLQVPLGAILTVEDGQDVKKDDPIFTWDPYTNPIIADVSGTLK
FVDLVEDETISEELDELTGLRQTVVIEDREKKLHPHIEIWQSKGGKEKKVRDFVIPVGAQ
LIVEDGAEIAAGQTIAKISREAYKTRDITGGLPRVAELFEARKPKDPATISEIDGVVRFG
DIKRGKREIFVHPIDSSGSLDETQQPQLYEVASGKHLRVHEGDRVRAGDRLSEGPVNPHD
ILRIKGPRAVQEYLLNEVQEVYRLQGVKINDKHIGVIVRQMLQKVRVVESGDTEFLEGEH
VDKAAFRDANDKAKKKKQRAATSEPLLLGITKASLTTQSFISAASFQETTRVLTDAAIRG
AKDNLLGLKENIIIGHLIPAGTGMYRYSDVDMDIEPPPAPPQEFGGFGALPESFLANPAE
ADASLLAPLPDEE
NT seq
4362 nt
NT seq
+upstream
nt +downstream
nt
atgatcgatttccgtagcgtccgcgagaagagcgcgtcggcgttcgactatatccaggtc
cgcatcgcttctccggaagagatccgcggcccccgggaccccaaggagcgcgagcggctg
gagatggccggccttcgctcgtggtggtcgtggggtgaggtgaccaagcccgagacgatc
aactaccgctcgttcaagcccgagaaggacggcttgttctgcgagaagatcttcggcccc
gtgaaggactgggagtgccactgcggcaagtacaagcggatccgctatcgcggcgtgatc
tgcgaccgttgcggcgtggaagtgacgctctcgaaggtgcggcgcgaccgcatgggccac
atcgaactggccgtgccggtggcgcacatctggttcttcaagaccctgcccagcccgatg
ggcaacctcctcgacctcacgctgcgtgatctcgagaaggtgatctactacgcgaactac
gtcgtgatcgatccgggcgcgcaggagtcggtccctgacgcgacggaatccgacaagttc
gtccgcgtcgagcagaatatgctgctctccgaggaccagttcctctacctcaaggcgaag
gccaaggaagacggcgacagcgccttcaaggccgacatcggtgcgccggcggtgcgcgag
ctcctgcagcgcctcgacatcgacaagacggccgaggagctccgcgcttcggtcgtgacg
gagacgtcgcagcacaagaagaaggcgcagctcaagcgcctcaagatcgtcgacgcgttc
cgcaactcgggcgaccactccggcatgcgcaacaagccggaatggatgatcatggacgtg
gtgccggtgattccgccggacctccgtccccttgtgccattggatggcggccgtttcgcc
acgtcggacctgaacgacctctatcgtcgcgtcatcaaccgcaacaaccgcctcaccaag
ctcatctcgcaccgcgcgccggaagtcatcctgcgcaacgagaagcgcatgttgcaggag
gcggtggacgcgttgttcgacaacggccgtcgctcgaaggcgatccgcggccgcggcaag
cgtccgctcaagtcgctgtccgacatgctgaagggcaagcagggccggttccgccagaac
ctgctcggcaagcgcgtggactactccggccgctcggtgatcgtggtgggcccggagctc
aagctgcaccagtgcggcctgccgaaggcgatggcgctggagctcttcaagccgttcatc
atccacaagctggtggagaagggcatcgcggagacggtgaagcgcgccaagaagatcgtg
gagcgcgagtcctccgaggtgttcgagatcctcgaagagatcatccgcgaccatccggtg
ctgctcaaccgtgcgccgacgctgcaccgcctgggcatccaggcgttcgagccggtgctg
gtggaaggcaaggccatccgcatccacccgctcgtctgcgcggcgttcaacgccgacttc
gacggtgaccagatggccgtgcacgtgccgctgtcgtacgaggcgcagctcgaggcgcgc
gtgctgatgctgtcgagcaacaacatcctcaagccgtcggacggccgtccggtggcggag
ccgtcgcaggacatcgtgctcggctgctacttcgcgaccaaggcgccggcggatttcgag
gcgctgcagaaggacgcgaaggcggcggccaagctgcggtcgttcggttcggcggccgag
gtggagatggcgctggccctgcaccagatccacgtgcagacgccggtgcgctacctcgcg
cgcacgaacgagggtggcaaggcgtggacggtgacgacggcgggccgcgtgctgttcgac
ggcatcgtgccggcggcgctgccgttccagaaccgcgacatgaagaagaaggcgctgggt
gaactcgtcttcgagtcctaccgcaaggcggggctggcggagacggtgcagttcctcgat
cgcctgaaggagttcggcttccgtaacgcgacccgcggtggcgtgtcgatcgcgatcgaa
gacctcgagatcccggcggagaaggagacgctgctcgaggaggcgacggcgcgcgtcaac
cgcttccagaaggcctatcagacgggcaacatcacgaacggcgagcgctacaacaaggtg
atcgacacctggacgcacgccaacaacgacatcgcggacgcgatggtgaagcgcatgcgc
gagtcgcagggcggcttcaaccccgtgttcatgatgttcgattccggttcgcgtggtagc
cgcgaccaaatccgccagctggccggcatgcgcggcctgatggcgaagccgcagaagaag
ctgacgggcggcatcggcgagatcatcgagaacccgatcaagtcgaacttccgtgaaggc
ctctcggtgctcgagtacttctcgtcgacgcacggtgcccgcaagggcctggccgacacg
gcgctcaagacggccgacgccggctacctgacgcgtcgtctctgcgacgtcgcgcaggac
gtggtgatcaccgaggaggattgcggcacggtgatgggcctcgagatcggcgcgctgaag
gaaggcgaagacatcatcgagccgttgtcggagcgcattgtcggcacggtggccgcggac
gacatcgtcgatccgcagctgctggacgaggcgggtcgcccgcagctgctcgtcgaggcc
ggccagatgatcctcgaggaagccgcggcgcagatcgaggaggcgggcatcgagacggtg
aagatccgtagcgtgctcacctgcgaggcgaagcgcggcctctgccggatgtgctacggc
cgcaacctggccaccatgcagatggtggacctgggcgaggccgtgggcatcatctcggcg
cagtcgatcggcgagccgggtacgcagctcacgctgcgcaccttccacatcggcggcacg
gcggcccgcatcgcggagcagacggcgcgcaagtcgaaggtggcgggcgtggtcgagttc
ggcgaccgcctcgtgaaggtgacgaatccggaaggccaggagatcgtgacctcgtacgag
ggcgagctgttcatccgcgcgacgcgggacaagcacgcgccggtgatggcgcgcctgcag
gtcccgctcggtgccatcctgaccgtcgaggacggccaggacgtgaagaaggacgatccg
atcttcacctgggacccgtacacgaacccgatcatcgcggacgtgtccggtacgctgaag
ttcgtggacctcgtggaggacgagacgatctccgaggagctcgacgagctcaccggcctg
cggcagacggtcgtcatcgaagaccgcgagaagaagctccacccgcacatcgagatctgg
cagtcgaagggcggcaaggagaagaaggtccgcgacttcgtgatcccggtgggcgcgcag
ctgatcgtcgaggacggggcggagatcgccgccggccagacgatcgcgaagatcagccgc
gaggcgtacaagacgcgcgacatcacgggcggcctgccgcgcgtggccgagctcttcgag
gcccgcaagccgaaggacccggcgacgatcagcgagatcgacggcgtcgtgcgcttcggc
gacatcaagcgcggcaagcgcgagatcttcgtgcacccgatcgacagctccggctcgctg
gacgagacgcagcagccgcagctgtacgaagtggcgtcgggcaagcacctccgcgtgcac
gagggtgaccgcgtgcgtgccggcgaccgcttgagcgaagggccggtgaatccgcacgac
atcctgcggatcaagggcccgcgcgcggtgcaggagtacctgctgaacgaagtgcaggag
gtgtatcgcctgcagggcgtgaagatcaacgacaagcacatcggcgtgatcgtgcgccag
atgctgcagaaggtgcgcgtcgtggagtcgggggacaccgagttcctcgagggcgagcat
gtcgacaaggcggcgttccgcgacgccaacgacaaggccaagaagaagaagcagcgtgcg
gcgacgtcggagccgctgctcctcggcatcaccaaggcctcactcaccacgcagtcgttc
atctcggccgcctcgttccaggagacgacccgcgtgctcaccgatgccgcgatccgtggc
gccaaggacaacctcctcggcctcaaggagaacatcatcatcggtcacctcatcccggcc
ggtacgggcatgtaccgctattcggacgtggatatggacatcgagccgccgccggcgccg
ccgcaggagttcggtggcttcggcgccctgccggagagcttcctggcgaacccggcggag
gcggacgcgagcctgctcgcgccgctgcccgacgaggagtaa
DBGET
integrated database retrieval system
