Pseudogemmatithrix spongiicola: Strain318_001387
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Entry
Strain318_001387 CDS
T10301
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
pspc Pseudogemmatithrix spongiicola
Brite
KEGG Orthology (KO) [BR:
pspc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pspc03016
]
Strain318_001387 (truB)
Enzymes [BR:
pspc01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
Strain318_001387 (truB)
Transfer RNA biogenesis [BR:
pspc03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Strain318_001387 (truB)
Prokaryotic type
Strain318_001387 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
DUF6247
DKCLD
Motif
Other DBs
NCBI-ProteinID:
WKW15022
UniProt:
A0AA49JZL4
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All DBs
Position
1537450..1538367
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AA seq
305 aa
AA seq
DB search
MTSPRPTATPDGLLLVDKPAGVSSHDVVNAARRAIGERRIGHAGTLDPFATGLLVLLVGR
ATRLLPHLPDEPKVYEARIAFGVETDTEDLLGQPVREAALPTRAALLAVLPRFVGRIDQV
PPAYSAKRIDGQRAYALARAGAAVELKPVPITVHRWELLAVDEDAEGRVRSVDARITCGG
GTYVRSLARDLARAVDSAAHLAALRRVRTGPFDVADAVTLEDLRERRAALRPALAALPGF
PVQRLSDDELAKIVRGIDVAATVPGPWGALVRADDDILVALAERRHGAGSSEGERWQPRV
VMREA
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
gtgacgagcccgcgcccgacggcgacgcctgacggcctgctgctcgtggacaagccggcg
ggcgtgtcctcgcacgatgtcgtgaacgccgcacggcgtgccatcggcgagcgccgcatc
ggccacgccgggacgctcgaccccttcgccaccggcctgctcgtgctactcgttggccgc
gccacgcgcctgttgccgcatctgcccgacgaacccaaggtctacgaggcgcgcatcgcc
ttcggggtcgaaaccgacactgaagacctgctcggacagcccgtgcgcgaggccgcgctg
cccacacgtgccgcgctcctcgcggtcctgccgcgattcgtcgggcgcatcgaccaggtg
ccgcccgcgtattcagccaagcgcatcgacggccagcgcgcctacgcgctggcccgcgcc
ggcgccgcggtcgagctcaagcccgtgcccatcaccgtgcaccgctgggagctcctcgcc
gtggacgaggatgccgagggccgcgtgcgcagcgtcgacgcgcgcatcacgtgtggcggc
ggcacctacgtgcgatcgctcgcccgcgacctcgcccgtgcggtcgacagcgcggcgcac
ctcgcggcgctgcgtcgcgtccgcaccgggcccttcgacgtcgccgacgccgtcacgctc
gaggacctgcgcgagcgccgcgcggcgctgcgaccggcgctcgccgcgctccccggcttt
ccggtgcagcgcctcagcgacgacgaactcgcgaagatcgtccgcggcatcgatgtcgcc
gcgacggtgcccggtccctggggcgccctggtgcgtgcggacgacgacatcctcgtcgcg
ctggccgaacggcgtcacggcgcgggctcctcagagggcgagcgctggcagccgcgggtg
gtgatgcgtgaggcctga
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