Pseudogemmatithrix spongiicola: Strain318_001462
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Entry
Strain318_001462 CDS
T10301
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pspc Pseudogemmatithrix spongiicola
Pathway
pspc02020
Two-component system
pspc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pspc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Strain318_001462 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Strain318_001462 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspc03021
]
Strain318_001462 (rpoN)
Transcription machinery [BR:
pspc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Strain318_001462 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_3
HTH_IclR
Phage_CII
IcmW
HTH_31
HTH_38
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
WKW15090
UniProt:
A0AA49Q8G9
LinkDB
All DBs
Position
complement(1615620..1617107)
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AA seq
495 aa
AA seq
DB search
MKGGMQQSARLGQELRANPRLYQAMDMLYMPLLDLQQHLKQELLQNPFLELVEEDEEEIV
ESASVELAESQSVEPEPEQGLPAEEREDDSRWEEILLDGMESGGMPEPRDDREPYEPVTV
ESRGLDDHLRDQVALLDLSERDRLLAEEFIGNINEDGYLAASLDDILHGINEVLLRAAEA
EDEEREVPLFTAADAQRMLTVMQTLDPPGIAARDLKECLALQLTAANLTGTLAERLVVEA
FPELVAHKWAEAARKLGCTPAEAQSAADALARLNPKPGRAFSEGDGNYVVPDLIVEKIDG
QYLVFTNDHNLPRLRLSRSYQEIARDKKRFDAEHKEFITSRLSAAQWLIQAIEQRRQTML
KVMHFIVDRQRDFFEKGVQGLKPLTLREVADAIGMHESTISRVTNEKFAQTPRGVLPLKF
FFSSGLKSADGEDVSARGIKATIEKLVADEDPKRPLTDDAIVKLLAKDGLSIARRTVAKY
RDELGILKAQMRKRL
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
gtgaagggcggcatgcagcagtccgccaggcttggccaggagcttcgggccaatccgcgc
ctgtaccaggcgatggacatgctgtacatgccgttgctcgacctgcagcagcacctcaag
caggagctgctgcagaatcccttcctcgagttggtcgaagaggacgaagaggagatcgtc
gagagcgcgagcgtcgagctcgccgagtcccagagcgtcgaaccggagcccgagcagggc
ctgcccgccgaggagcgcgaagacgattcgcgctgggaggagatcctcctcgacggcatg
gagagcggcggcatgccggagccgcgcgatgaccgtgagccctacgaaccggtcacggtc
gagtcccgcggcctcgacgatcacctgcgtgaccaggttgccctcctcgacctcagcgag
cgcgaccgcctgctggccgaggagttcatcggcaacatcaacgaggacgggtacctcgcg
gcctcgctcgacgacatcctgcacggcatcaacgaggtgctgctgcgtgccgccgaggcg
gaggacgaggagcgcgaagtcccgttgttcacggcggcagacgcgcagcgcatgctcacc
gtgatgcagacgctggatccacccggcatcgcggcgcgcgacctcaaggagtgcctcgcg
ctgcagctgacggccgccaatctcacgggcacgctcgcggagcggctcgtggtcgaggcg
tttccggaactcgtcgcgcacaagtgggccgaggccgcgcgcaagctcggctgcacgccc
gccgaggcgcagagcgccgccgatgccttggcccgcctcaatccgaagcccggccgtgcc
ttcagcgagggcgacggcaactacgtggtgccggacctcatcgtcgagaagatcgacggg
cagtacctggtcttcaccaacgaccacaacctcccgcgcctgcgcctctcgcgcagctac
caggagatcgcccgcgacaagaagcgcttcgatgccgagcacaaggagttcatcacctcg
cggctgagcgccgcgcagtggctgatccaagccatcgagcagcgccgccagacgatgctc
aaggtgatgcacttcatcgtggaccggcagcgcgacttcttcgagaagggcgtgcagggc
ctcaagccgctcacgctgcgcgaggtggcggatgccatcggcatgcacgagagcaccatc
tcgcgcgtcacgaacgagaagttcgcgcagacgccccgcggcgtcctcccgctgaagttc
ttcttctcgtcgggcctcaagagcgccgacggcgaagacgtgtccgcccgcggcatcaag
gccaccatcgagaagctcgtggcggacgaggaccccaagcgaccgctcaccgacgacgcc
atcgtgaagctgctggccaaggacggtctctcgatcgcccgccgcaccgtcgcgaagtac
cgcgacgaactcggcatcctcaaggcgcagatgcgcaagcgcctctga
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