Pseudogemmatithrix spongiicola: Strain318_001627
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Entry
Strain318_001627 CDS
T10301
Name
(GenBank) DUF853 family protein
KO
K06915
DNA double-strand break repair helicase HerA and related ATPase
Organism
pspc Pseudogemmatithrix spongiicola
Brite
KEGG Orthology (KO) [BR:
pspc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspc03400
]
Strain318_001627
DNA repair and recombination proteins [BR:
pspc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Archaeal homologous recombinant proteins
Strain318_001627
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HerA_C
DUF87
AAA_10
AAA_22
AAA_30
ResIII
T2SSE
TrwB_AAD_bind
AAA_19
AAA_28
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
WKW15250
UniProt:
A0AA49JZS1
LinkDB
All DBs
Position
1791076..1792626
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AA seq
516 aa
AA seq
DB search
MPTPLIIAKNATDELALLPALANRHGCITGATGTGKTISLQVLAEQFSRIGVPVFLADVK
GDLGGIAQSGALSAKLQERLDKLGLPAPTFGPCPVTFWDVFGKSGHPVRATISDMGPLLL
ARLLNLNDTQEGVLTIAFQVADDNGLLLLDLKDLRSMLQFIGDNAAQIKTQYGNVSAASI
GAIQRGLLQLEQQGAEAFFGEPMLNIDDLMQTVDGKGVVNILAADTLMQNPRLYACSLLW
LLSELFENLPEVGDLEKPKLVFFFDEAHLLFADAPTALVEKVELVVRLIRSKGVGVYFVT
QNPMDIPEKVLGQLGNRIQHALRAFTPRDQKAVRATAETMRPNPALDIEQAILELSVGEA
LVSLLDGKGTPGITERAWMFAPGSRIGPLTAEERAAIVAQSVVAGVYEKHLDRESAFEML
KARAETAQPAPGGRDAGAAAQSPGSAKTAGGSGAGAAGVAGALGGLLFGTVGPRGGKRDG
LVDIMAKSAARSTGTAISRSIVRGVLGSLLGGGKRR
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgcccaccccgctgatcatcgcgaagaacgcgactgacgagctcgccctcctccccgcc
ctcgccaatcgccacggctgcatcaccggcgccacgggcacgggcaagaccatctcgctg
caagtcctcgccgagcagttctcgcgcatcggcgtccctgtcttcctcgcggatgtgaag
ggcgacctcggcggcatcgcgcagtccggcgcactgtcggccaagctccaggagcgcctc
gacaagctcgggctgcccgcgccgaccttcggcccctgccccgtcaccttctgggacgtc
ttcggcaagagcggtcaccccgtgcgcgcgacgatctctgacatgggcccgctgctgctc
gcgcgcctgctgaatctcaacgacacgcaggaaggcgtgctcaccatcgccttccaggtc
gccgatgacaacggtctgctgttgctcgacctcaaggacctgcggtccatgctgcagttc
atcggcgacaacgcggcgcagatcaagacgcagtacggcaacgtgtcggccgcgagcatc
ggcgcgatccagcgcggattgctgcagctcgagcagcaaggcgccgaggccttcttcggc
gagccgatgctcaacatcgacgacctcatgcagacggtcgacggcaagggcgtcgtgaac
atcctcgccgccgacacgttgatgcagaacccacggctctacgcctgctccctgctgtgg
ctgctcagcgaactcttcgagaacctccccgaagtcggcgacctcgagaagccgaagctc
gtgttcttcttcgacgaagcccacctgctcttcgccgatgcccccacggcgctggtcgag
aaggtcgaattggtcgtgcgcctcatccgctcgaagggcgtcggcgtgtacttcgtcacg
cagaacccgatggacatccccgagaaggtgctcgggcagctcggcaaccgcatccagcac
gcgctgcgcgccttcacgccgcgcgaccagaaggccgtgcgggcgaccgccgagacgatg
cgtccgaaccccgccctcgacatcgagcaggcgattctcgagctctcggtcggcgaggcg
ctcgtctcattgctcgacggcaagggcacgcccggcattaccgaacgcgcgtggatgttt
gcgccgggcagtcgcatcggtccgctcacggccgaggaacgcgcggcaatcgtggcacag
agcgtcgtcgccggcgtgtacgagaagcacttggaccgcgagtcggctttcgagatgctc
aaggcccgcgccgagaccgcgcagcctgctccgggcggccgagatgccggtgcggcagcc
caatccccgggtagcgccaagaccgcgggcggctcgggcgctggcgcagcgggagtcgcg
ggagcgctgggcggtctgctcttcggcacggttggtccccgcggcggcaagcgtgatggc
ttggtcgacatcatggccaagagcgcggcgcgttcaacgggaacggccatctcgcgcagc
atcgtgcgcggcgtgctcggcagcctcttgggcggcggaaagcgccgttag
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