Pseudogemmatithrix spongiicola: Strain318_001644
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Entry
Strain318_001644 CDS
T10301
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pspc Pseudogemmatithrix spongiicola
Pathway
pspc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Strain318_001644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspc03019
]
Strain318_001644
03016 Transfer RNA biogenesis [BR:
pspc03016
]
Strain318_001644
Enzymes [BR:
pspc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Strain318_001644
Messenger RNA biogenesis [BR:
pspc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Strain318_001644
Transfer RNA biogenesis [BR:
pspc03016
]
Prokaryotic type
tRNA degradation factors
Strain318_001644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_KhpA-B
PCB_OB
S1_2
Endonuc_Holl
KH_2
Motif
Other DBs
NCBI-ProteinID:
WKW15267
UniProt:
A0AA49Q7N8
LinkDB
All DBs
Position
complement(1811895..1814120)
Genome browser
AA seq
741 aa
AA seq
DB search
MMHRIERTFAGRPLIIETGRMAKQAAGSALVTYGETVLLAAVTVSDKKSPLPFFPLTVEY
KEKMYASGKIPGGFIKREGRPRDEEILSCRIIDRSIRPLFPEGFQNEVQVVIYVLSADQE
NDHDVLGLIATSYALASSKIPWAGPIAGVRVGRIEGKWVLNPTFQALEFSDIDMVVAGTD
DSIMMVEGGALEVSEADIVDALKVAQKGLAELVGMQEELLKKAGKVEKMEWKGTEIPDDV
RKTVTKAAEKRIEAAINQKDKATRIQAVEKVKEEVKAEMAEVLAPEHHGLVGMIVGDIEY
NALRDQVLSTGLRVDGRKPNVVRDISIDTSVLPRAHGSALFTRGQTQALVVATLGTANDV
QRMDNIDEPKESTKSFMLHYNFPPFSTGEAKPMRGTGRREIGHGALAERAIQGVLPPFEE
FPYTIRIVSEILESNGSSSMASICGGSLACFDAGIPLKAPVAGVAMGLIKEGKKYAILTD
ILGTEDHLGDMDFKVAGTETGITSIQMDIKIQGLDLKIMTEALAQAKEGRLHILGEMNKA
LPTVRPELSPWAPRIVTMTINPEKIGDLIGPKGKTIRGIQDETGAEVTVDDSGLVTIAAV
GGEAMERAKQMVQAITAEPVVGETYQGTVKSVTAFGAFIEIMPGTEALLHVSEMRHHRVE
KPEDIVKKGETVTVKLIDRDERGRLRLSMKALLPKPEGADSAAEGEGASSEGGEGGERRE
RRDRGDRPRGDRGGRGGRGRE
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgatgcatcgtattgagcggaccttcgctggccgccccctcatcatcgagaccgggcgc
atggccaagcaggccgccggctcggccctcgtcacctatggcgagaccgtcctcctcgcg
gccgtcacggtcagcgacaagaagagccccctcccgttcttccccctgacggtcgagtac
aaggaaaagatgtacgcctcgggcaagatcccgggcggcttcatcaagcgcgaaggtcgt
ccgcgcgatgaagagatcctctcctgccgtatcatcgaccgctccatccggccgctgttc
ccggaaggcttccagaacgaagtgcaggtcgtgatctacgtcctctccgccgaccaagag
aacgaccacgacgtgctcggcctcatcgccacgagctacgcgctggcctccagcaagatt
ccgtgggcgggcccgatcgccggcgtccgcgtcggccgcatcgaaggcaagtgggtgctc
aacccgacgttccaggcgctcgagttctcggacatcgacatggtcgtcgccggcacggat
gactcgatcatgatggtcgagggcggcgcgctcgaagtctcggaagccgacatcgtcgac
gcgctcaaggtggcccagaagggcctcgccgagctcgtcggcatgcaggaagagctgctc
aagaaggctggcaaggtcgagaagatggagtggaaggggacggagatccccgacgacgtg
cgcaagacggtgacgaaggccgccgagaagcgcatcgaagccgccatcaaccagaaggac
aaggcgacgcgcatccaggccgtcgagaaggtgaaggaagaggtcaaggccgagatggcc
gaggtcctcgcgccggagcatcacggcctcgtcggcatgatcgtcggcgacatcgagtac
aacgcgctgcgcgaccaggtgctgagcaccggcctgcgcgtcgacggccgcaagccgaac
gtcgtgcgcgacatctcgatcgacacgtcggtgctgccgcgcgcccacggctccgcgcta
ttcacgcgcggccagacgcaggcgctcgtggtcgcgaccctcggtacggcgaatgacgtc
cagcgcatggacaacatcgacgagccgaaggagtcgacgaagtccttcatgctgcactac
aacttcccgccgttctcgacgggcgaagccaagccgatgcgcggcacgggccgtcgcgag
atcggccacggtgcgctcgccgagcgtgcgatccagggcgtgctgccgccgttcgaggaa
ttcccgtacacgatccgcatcgtgtcggagatcctcgagtcgaacggctcgtcctcgatg
gcgtcgatctgcggcggttcgctggcctgcttcgacgcgggcatcccgctcaaggcgccg
gtggccggcgtcgcgatgggcctgatcaaggaaggcaagaagtacgcgatcctcacggac
atcctgggcaccgaagaccacctcggcgacatggacttcaaggtcgcgggcaccgagacc
ggcatcacgtccatccagatggacatcaagatccaggggctcgacctcaagatcatgacc
gaggcgctggcgcaggccaaggaaggccgcctgcacatcctcggcgagatgaacaaggcg
ctgccgaccgtgcgtccggagctgtcgccgtgggcgccgcgcatcgtgacgatgacgatc
aacccggagaagatcggcgatctcatcggcccgaagggcaagacgatccgcggcatccag
gacgagacgggtgcggaagtcaccgtggacgactcgggcctggtcaccatcgccgccgtc
ggcggcgaggcgatggagcgcgcgaagcagatggtgcaggcgatcaccgccgagccggtg
gtgggcgagacctaccagggcacggtgaagtcggtgacggcgttcggcgccttcatcgag
atcatgccgggcaccgaggccctgctgcacgtctccgagatgcgccaccaccgcgtggag
aagccggaagacatcgtgaagaagggcgagaccgtgacggtcaagctcatcgaccgcgac
gagcgcggccgtctgcgcctctcgatgaaggcgctgctgccgaagccggagggcgccgac
tcggcggccgagggcgaaggcgcgtcgtcggaaggtggcgagggcggcgagcgccgcgag
cgtcgtgaccgtggcgatcgcccgcgtggcgaccgcggcgggcgcggaggccgcggccgc
gagtga
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integrated database retrieval system
