Pseudogemmatithrix spongiicola: Strain318_001840
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Entry
Strain318_001840 CDS
T10301
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pspc Pseudogemmatithrix spongiicola
Pathway
pspc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pspc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Strain318_001840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspc03021
]
Strain318_001840
03400 DNA repair and recombination proteins [BR:
pspc03400
]
Strain318_001840
Enzymes [BR:
pspc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Strain318_001840
Transcription machinery [BR:
pspc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Strain318_001840
DNA repair and recombination proteins [BR:
pspc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Strain318_001840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
FlaX
Motif
Other DBs
NCBI-ProteinID:
WKW15454
UniProt:
A0AA49JV17
LinkDB
All DBs
Position
complement(2019506..2020579)
Genome browser
AA seq
357 aa
AA seq
DB search
MSQTIDLRGLVRPQLVEMTKRDDNPNVAEFRLQPLERGFGHTLGNAMRRMLLSSLRGAAV
WGIRIDGVLHEHQTIPGVVEDVHQIVANLKTLVLALDEDVEDAILRVKVTKSGAVTAGQL
DLPAGVRVVDAAHHILTLQDDRDLSIELYVNKGRGYIEAEQHPTDRSLPVDLVRIDSIYS
PVKRTNFAVAETRVGQRTDYDRLTMTVETNGTISPEQAVSYAAALAQTHFQYFASFGTHA
AAAVAVPGAEGSSDAARLAELLRTPIDDLSLSVRSVNSLKNSSIRSLGDLVRQTEAQILQ
VKNFGKKSLQEIADLLEKEGLNFGMRFEESTDGVRVADWGTPPSRAAAAAPDDDEEE
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagacgattgacctccgcggccttgtccgtccgcagctcgtcgaaatgacgaag
cgcgacgacaacccgaatgtcgcggagttccggttgcagccgctcgagcgtggctttggc
cacaccctcggcaacgccatgcgtcgcatgctcctgtcgagcctgcgcggcgccgccgtg
tggggcatccgcatcgacggcgtgctccatgagcaccagaccatcccgggcgtcgtcgaa
gacgtccaccagatcgtcgcgaacctcaagaccctcgtgctcgcgctggacgaggatgtc
gaggacgcgatcctgcgcgtgaaggtcaccaagagcggcgccgtgaccgcgggtcagctc
gacctgccggccggcgtgcgcgtcgtcgacgccgcgcaccacatcctcacgctgcaggac
gatcgcgatctctcgatcgagctgtacgtgaacaagggccgcggctacatcgaggccgag
cagcacccgacggatcgttcgctgccggtcgacctggtccgcatcgactcgatctactcg
ccggtcaagcgcacgaacttcgccgtcgccgagacgcgcgtcggacagcgcacggactac
gaccgcctcacgatgacggtcgagaccaacggcaccatctcgccggagcaggcggtcagc
tacgccgctgcgctggcgcagacgcacttccagtacttcgcgtccttcgggacccacgcg
gccgctgcggtggccgtgccgggcgccgagggctcgagcgatgccgcgcgcctcgccgag
ttgctccgcacgccgatcgacgatctctcgctgtccgtgcgctcggtgaactcgctcaag
aactcgagcatccgttcgctgggtgacctggtccgccagacggaagcgcagatcctgcag
gtcaagaatttcggcaagaagtccctccaggagatcgccgacctcctcgagaaggaagga
ctcaatttcgggatgcggtttgaggagtcgacggatggggtgcgcgtggccgattggggc
acgccgccgagccgtgcggccgctgctgcgcctgacgacgacgaagaggaataa
DBGET
integrated database retrieval system
