Pseudogemmatithrix spongiicola: Strain318_002116
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Entry
Strain318_002116 CDS
T10301
Name
(GenBank) AMP-binding protein
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
pspc Pseudogemmatithrix spongiicola
Pathway
pspc00061
Fatty acid biosynthesis
pspc00071
Fatty acid degradation
pspc01100
Metabolic pathways
pspc01212
Fatty acid metabolism
pspc02024
Quorum sensing
pspc04146
Peroxisome
Module
pspc_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
pspc00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Strain318_002116
00071 Fatty acid degradation
Strain318_002116
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Strain318_002116
09145 Cellular community - prokaryotes
02024 Quorum sensing
Strain318_002116
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
pspc01004
]
Strain318_002116
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pspc04147
]
Strain318_002116
Enzymes [BR:
pspc01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Strain318_002116
Lipid biosynthesis proteins [BR:
pspc01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Strain318_002116
Exosome [BR:
pspc04147
]
Exosomal proteins
Exosomal proteins of breast milk
Strain318_002116
Exosomal proteins of breast cancer cells
Strain318_002116
BRITE hierarchy
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Ortholog
Paralog
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GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
WKW15714
UniProt:
A0AA49K107
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All DBs
Position
2328497..2329999
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AA seq
500 aa
AA seq
DB search
MDLLPLRAAAGRGSIDGIPAAALVSAGFTLLQRCVPLVRALAGRRSAILLPSSPQFLLAL
AASDGRGAVLVNPLASSAEVEHQLRESNVGAVFTVRALAAKVPEHLPCVLLDEAPRRATF
SVLGGDDLEIDLGSHFGLDLEGDADATGRDEECAIVYTSAMAGTPLGAVLTHRNLITNAR
QTVQAAENTPQDHLLAVLPFSHLFGLTVSLIAPMMAGARVTTMPRFNPIAAVDLIEREGI
TEIVGVPAVFAAMLGAIARRGGKLAAPALRLCICGGAPLSVALQEQWEAATGVPLRQGYG
LTEASPVALFNRVNAENVRGTLGLPFPGVSISIRDSVTGAELPAGSVGEICVAGDTVFRG
YVSELPATPDFLAPAAASADSLARRAQSAGLRTRDGWLYTGDAGVLRSDGRVEFRGLIKP
MFTRNGFNIYPREIERVLSLMPGVARAAVTPLPEPARENDIRLELWLDGSRGVSDAEVKA
WCEQRLAQYKQPSQIVIAGA
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atggacctcctgcccctcagggccgcggctggacgcggcagcattgatgggattcccgcg
gcggcgctggtgtcggctgggttcacgctgctgcagcgctgcgtgccgctggtgcgcgcg
ctggcggggcggcgctcggcgatcctgctgccctcgtcgccacagttcctgctcgcgctc
gccgcctcagatgggcgcggtgcggtgctggtgaacccgctcgcgtcgagcgccgaggtg
gagcatcagctgcgggaatcgaacgtgggggcggtgttcacggtgcgggcgttggccgcg
aaggtcccggagcatctgccctgcgtgttgctcgacgaggccccgcgccgcgcgaccttt
tccgtactcggcggcgatgacctcgagatcgacctcggcagccacttcggcctcgatctc
gaaggcgacgcggacgcgaccgggcgcgacgaggagtgcgccatcgtctacaccagcgcg
atggccggcacgccgctcggcgcggtgctcacgcatcgcaatctcatcacgaacgcgcgg
cagacggtgcaggccgcggagaatacgccgcaggatcacctgctcgcggtactgccgttc
tcgcacctgttcgggctcaccgtttcgctgattgcgccgatgatggccggggcgcgggtc
acgacgatgccgcgcttcaatccgattgccgcggtggacctgatcgagcgggaaggcatc
acggaaatcgtcggcgtgccggccgtgttcgccgcgatgctcggcgcgatcgcacggcgt
ggcggcaagcttgcggcccctgccctgcgcctctgcatctgcggcggcgccccgctgagt
gtcgcgctgcaggagcagtgggaggcggcgacgggcgtgccgctgcgtcagggctacggc
ctcaccgaagcgtcgccggtggcgctgttcaatcgcgtgaacgccgagaacgtgcggggc
acgcttgggctgccctttcccggcgtctcgatctcgattcgcgattccgtgaccggcgcg
gagctgccggcgggcagcgtcggcgagatctgcgtggcgggcgacacggtgttccgcggc
tacgtgagcgagttgccagcgactccggacttcctcgcgccggctgccgcgagcgccgac
tcgctggcgcgccgcgcacaatcggcgggattgcgcacccgcgacggctggctctacacg
ggtgatgcgggcgtgctccgcagcgacggccgcgtggagttccgcggtctcatcaagccg
atgttcacgcgcaacggcttcaacatctatccgcgcgagatcgagcgggtgctgtcgctg
atgccgggcgtcgcgcgtgcggcggtgacgccgctgcccgagccggcgcgggagaacgac
attcgcctcgagctgtggctcgatggcagtcgtggggtgagcgacgccgaggtgaaggcg
tggtgcgagcagcggctcgcgcagtacaagcagccatcgcagatcgtcatcgcaggcgcg
tga
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