Pseudogemmatithrix spongiicola: Strain318_002951
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Entry
Strain318_002951 CDS
T10301
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
pspc Pseudogemmatithrix spongiicola
Pathway
pspc03030
DNA replication
pspc03430
Mismatch repair
pspc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pspc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Strain318_002951 (holA)
03430 Mismatch repair
Strain318_002951 (holA)
03440 Homologous recombination
Strain318_002951 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pspc03032
]
Strain318_002951 (holA)
03400 DNA repair and recombination proteins [BR:
pspc03400
]
Strain318_002951 (holA)
Enzymes [BR:
pspc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Strain318_002951 (holA)
DNA replication proteins [BR:
pspc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Strain318_002951 (holA)
DNA repair and recombination proteins [BR:
pspc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Strain318_002951 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_gamma3
Motif
Other DBs
NCBI-ProteinID:
WKW16534
UniProt:
A0AA49K2W6
LinkDB
All DBs
Position
complement(3242944..3244005)
Genome browser
AA seq
353 aa
AA seq
DB search
MAATSFKSLRTALETGGFDPVYVFHGADDHLKDEWVRLVMAHAVDESTRDFNCDVLRGAE
LEVSGLSAALEALPMLAARRLVVLRDPGAMKKPLRERLERYLAKPAPEVVLLLVVPSTAT
KLDPWLAKAGSVYEFKELEGEELAKWIAKEAKDRCGVAITAAAVDRLAGYTGSDLPMLAG
ELRKLAAYVNGGTIDEAAVEAMTGVRPGATLADLLDRAAQRDTTGAIAIVRDVLAQPKQS
GVTTVLALTAQMLAIGWGCAARARGMSASRLESEFFTLLKEGGSVYTGRSWGDAVKCWAR
AVPKWSVADVVRALPHLHAADATLKDTRISSEEQVIVSLLLAITPPSGAKRAA
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaccagcttcaagtcgcttcggacggccctcgagaccgggggcttcgacccg
gtgtacgtcttccacggtgcggatgaccacctgaaggacgaatgggtgcgcctcgtcatg
gcgcacgccgtcgacgagagcacgcgcgacttcaactgcgacgtgttgcgcggtgcggag
cttgaggtgagtgggctgtccgcggcgctcgaggcgctgccgatgctggcggcgcggcgg
ctggtcgtgctccgcgacccgggcgcaatgaagaagccgctgcgcgagcgattggagcgc
tatctcgccaagccggcacccgaggtcgtgctgctgctcgtcgtgccgagcacggcgacc
aagttggatccgtggctcgcgaaggccggcagcgtctacgagttcaaggaactcgaaggc
gaggaactcgccaagtggatcgcgaaggaagccaaggaccgctgcggcgtagcgatcacg
gcggctgcggtggatcgcctcgcgggctacacggggagcgatctcccgatgctcgccggc
gagctgcggaagctcgcggcctacgtgaacggcggaacgatcgacgaagccgccgtcgag
gcgatgacgggcgtgcggcccggcgccacgctcgcggacctgctggaccgcgcggcgcag
cgcgatacgacaggcgcgatcgcaatcgtccgcgatgtgctggcgcagccgaagcaatcc
ggcgtgacgacggtgctcgcgttgacggcacagatgctggccatcggctggggctgcgcg
gcgcgcgcgcgcgggatgtcggcgagccgtctcgagagcgagttcttcacgttgctcaag
gaaggtggcagcgtgtacaccggccgttcgtggggcgacgccgtgaagtgctgggcgcgg
gccgtgccgaagtggagcgtcgcggacgtggtgcgcgcactgccgcacctccatgccgcc
gatgcgacgctcaaggacacgcgcatctcgagcgaagagcaggtgatcgtctccctgctg
ctggcgatcacgccgccgagcggcgcaaagcgcgcggcgtga
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