Psychrobacter sp. P2G3: AK823_01350
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Entry
AK823_01350 CDS
T04386
Name
(GenBank) RNA polymerase subunit sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pspg
Psychrobacter sp. P2G3
Pathway
pspg02020
Two-component system
pspg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pspg00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AK823_01350
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AK823_01350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspg03021
]
AK823_01350
Transcription machinery [BR:
pspg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AK823_01350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_21
Motif
Other DBs
NCBI-ProteinID:
AMN48711
LinkDB
All DBs
Position
317052..318740
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AA seq
562 aa
AA seq
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MSMSFGLATALTTSQKLTPQMQQAIKLLQLSSLELAQEVQAKLDSNPLLERVEEDEYGDS
GDELADDLDDSLTLEMWNGDSEIGVSTDLSDSPATDDAFDYDTAEYDDTFNDSLDKLQQA
NIDGSAMDNTAIDNDYQSNDYQGTDSDESYSSYDLGSFSGSSAAVSADYDELDDYQGSTS
TSIQDYVRWQLNFKRLSETDTLIAEYLMDSMDDMGFVQLDIDELLKSLETMASFYQWDDH
IERDEIEVVLRIIQSCDPLGVGARNLSECLAIQLAKLDPDTAYLQHAQALLSASEHLVSN
NIKALTDTTGLLSAHITPALSLLRTLNPAPGLSFQSSQPDYTQPPASYDIPDVLVTPIRR
TSNGKTPDGGWHVRLNPATLPKLRVNQEYANLVKRGDDSSDNQYLRENLTDARLFIRSIE
ERNQNLLKVATSIVRRQDEFLQYGATAMQPLILKDVAAEVDLHESTVSRLTTSKTILTPQ
GLFSLKHFFSSHVSSSDGDISSTAISAMIKQLINDENPKKPLSDSRIQTQLLTDGIDIAR
RTVAKYREAMNISSSTQRKQKY
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgagtatgtcgtttggattggcgaccgcgctaactacctcacaaaagctaaccccgcag
atgcagcaagctatcaaattgttgcagctctctagtcttgagcttgcacaagaggttcag
gctaagctggatagtaatccattactcgagcgcgtcgaggaagatgagtatggagatagt
ggtgatgaactcgccgacgatctagatgattccttgacgcttgagatgtggaacggcgat
agcgaaattggtgtatctactgatctatctgattcaccagctaccgatgatgcttttgat
tatgacactgccgaatatgacgacacattcaacgatagcttagataaattgcaacaggca
aatattgatggcagtgctatggataatactgcgatagacaatgactatcaaagcaatgat
tatcaaggtacagatagcgatgaaagctatagcagctatgatcttggtagctttagtggc
agtagcgcagcagtaagcgcagattatgatgaacttgatgattatcaagggagcaccagt
actagtattcaagactatgtacgctggcagcttaattttaaacgtctttcagagacagat
accttgatcgcagagtatctcatggattcgatggatgacatgggttttgtgcagttagat
attgacgagttgctaaaaagtctagagacaatggcaagtttttatcaatgggatgaccat
atagagcgcgatgagatagaagtggtactgcgcattatccaatcttgtgatccattaggc
gtaggcgcacgtaatttaagcgaatgtctcgctattcaattggctaagcttgaccctgac
actgcatacctccagcatgcacaagccttgctgtctgctagcgagcatttggttagcaat
aatattaaagcattaaccgatactactggcttgttatctgcacacattacccccgcactt
agcctattacgcacattaaaccctgcgccaggcctatcatttcaaagcagtcagcctgat
tacactcagccgcctgcaagctacgatatccctgatgtattagtaaccccaatacgtcgc
acctctaacggtaaaacaccagatggtggctggcatgtacgtctcaatccggccacatta
ccgaaactacgagttaaccaagagtatgcaaacttagtcaagcgtggcgatgatagctcc
gacaatcagtatttacgtgaaaaccttacagacgcacgactatttattcgtagtatcgag
gagcgtaatcaaaacctgcttaaagttgcgaccagtatcgtacgccgtcaagatgagttt
ttgcaatatggtgctacagctatgcaacctttaatactaaaggatgtcgctgctgaagtt
gacctacacgaatctacagtgtcgcgtttgaccaccagtaagacgattctaactccgcag
ggactgttttcgctcaagcatttcttttcgtcacacgttagcagtagtgatggggatatt
tcttcgaccgctatcagtgccatgattaagcagcttatcaatgacgagaatccaaaaaag
cctctgtccgatagccgtatccaaacccagctactcactgacggtatagatatcgcgcga
cgtaccgttgctaaatatcgagaagcgatgaatattagctcctccacgcagcgcaagcaa
aaatactag
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