Psychrobacter sp. P2G3: AK823_11975
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Entry
AK823_11975 CDS
T04386
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pspg
Psychrobacter sp. P2G3
Pathway
pspg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pspg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AK823_11975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspg03021
]
AK823_11975
03400 DNA repair and recombination proteins [BR:
pspg03400
]
AK823_11975
Enzymes [BR:
pspg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AK823_11975
Transcription machinery [BR:
pspg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AK823_11975
DNA repair and recombination proteins [BR:
pspg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AK823_11975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AMN50498
LinkDB
All DBs
Position
complement(2930121..2934347)
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLDIMQSPTASGNREFDSIQITLASPDVIKSWSHGEVKKPETINYRTFKPERDGLFC
AKIFGPVKDFECLCGKYKRRKFQGVICEKCGVEVTTAKVRRDRMGHIDLASPVAHIWFLK
SLPSRIGLLLDMTLRDIERVLYFESYIVTEPGLTSLEKYQLLDDEDYYKALEEFGDEFVA
KMGAEAVQDLLKDIDLDLEIDELREAIPQTGSETKLKKMSKRLKLLEAFRDSNNKPEWMV
MTILPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLELSAPDIIVRNEKRM
LQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVG
PTLRLHQCGLPKKMALELFKPFTYSKLLSHGMATTIKAAKKMVEREEPQVWDMLAMVIRE
HPVLLNRAPTLHRLGLQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLTLEAQL
ESRALMMSTNNILSPANGDPIIVPSQDVVLGLYYISRSSVNAKGEGMIFATVNEALRAIG
SNDLHVNAKIKVRVTETHIDEEGNETNKEVSLKETVAGRLLIWNIMPNGMAFDECNQEMT
KKNISRLINSCYRKMGAKGSVMFADQLMYLGFAQATLSGVSVGIDDMVIPPSKKQIIEVA
EAEVREIEDQFEQGFVTAGERYNKVVDIWSRTNDKVAKAMMDNLATDKVINAQGEEEEQK
SFNSIYIMSDSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIKANFREGLTVLQYFISTH
GARKGLADTALKTANSGYLTRRLVDVAQDLVITTDDCGTDVGLLMTPHIQGGEIIEKLGD
LVLGRVTARDVTYNDDDSKILVPAGTLIDEHWVNVLDENAIDDIWVRSVITCNVAHGVCS
QCYGRDLARGHKVNIGESVGVMAAQSIGEPGTQLTMRTFHVGGAASSASVDNSISVRNAG
QAHFENMKTVQHTDGHLVIVSRSAEIALTDELGRERERYKVPYGSSVLVKHEDQVEGGQT
IAKWDPHTHPIITEFAGTARFSEITDGMTATVKVDDATGMSSFEILATRDRSSTAKDLRP
AIILNTDEGKEVIYFLPAETIIRVSDGEKVAAGSILGRVPQATSGTKDITGGLPRVADLF
EARRPKDHAIMAEMTGVVSFGKETKGKNRFIITNEDGEVHEELIPKWRQINVFENETVAR
GEVIADGPQNPHDILRLKGQTALANYIVNEVQDVYRLQGVKINDKHIEVIIRQMLRKVEI
TDGGDSSHFKGDQAEYADIRALNAKLEAEDKFPVQYERQLLGITKASLATESFISAASFQ
ETTRVLTAAAVTGKVDELRGLKENVVVGRLIPAGTGLAYHKARKEKAEQKLLDKDINAAF
DMTASTDSKDFASFDEAFAQELNQDSQS
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagatttactcgatattatgcaaagccctaccgctagcggtaatcgtgagtttgat
agtattcaaattaccttagcgtcacctgatgttattaaatcatggtcgcatggtgaagtt
aaaaagcctgaaacgattaactatcgtaccttcaagcctgagcgtgacggtctgttctgt
gccaaaatctttggtccagttaaagattttgagtgcctatgtggtaaatataagcgccgt
aaattccaaggcgtaatctgtgaaaaatgtggcgttgaagtcactaccgctaaagttcgt
cgtgatcgcatgggtcatattgacctagcgagtcctgttgcgcatatttggtttttaaag
tcattaccaagccgtattggtctattattagacatgactttgcgcgatattgaacgtgta
ttgtattttgaaagctatatcgttactgagccaggtttaactagcttagagaaatatcag
ctgcttgatgatgaagattattataaagcccttgaagaatttggcgatgaattcgtagcc
aagatgggtgctgaagccgtacaagatctattaaaagatattgatttagaccttgagatt
gacgagctacgcgaagctattccgcagacaggttctgagactaagcttaaaaagatgtct
aagcgtcttaaattattagaagcattccgtgattctaataataagcctgagtggatggta
atgaccatcttgccagtactaccaccagatttgcgcccactagtgccactagaaggcgga
cgttttgcgacctcagatctaaacgatttgtatcgccgcgtcattaatcgtaacaaccgt
ctaaagcgtctattagagctaagcgctcctgatattatcgtacgtaacgaaaagcgtatg
ttacaagaatcagttgatgctttattagataacggccgtcgcggtcgtgctattactggt
agtaacaagcgtccattaaaatctttggctgatatgatcaaaggtaagcaaggtcgtttc
cgtcaaaacttacttggtaagcgtgtcgactattctggtcgttcggttatcgtagtaggt
ccaacgctacgtctgcatcagtgtggtttgcctaagaaaatggcacttgagctattcaag
ccgtttacttattcaaaattattgtctcacggtatggcaaccacgattaaagcggccaaa
aaaatggtcgaacgtgaagagccacaagtgtgggatatgctggccatggttatccgtgag
catccagtactactaaaccgtgcaccaacgcttcaccgtttgggtctacaagcgttcgag
cctgtactaatcgagggtaaagctatccagctgcatccgctcgtttgtactgctttcaac
gctgactttgatggtgaccaaatggcagtacacgtgccattgacgttagaggcacaactc
gaatcacgtgcgctaatgatgtcaaccaacaacatcttgtcacctgctaacggtgatccg
attattgtaccgtcacaagatgtggtacttggtttgtattacatcagtcgctcatcagtg
aatgccaaaggcgagggcatgatttttgctaccgtcaatgaagcattacgtgccatcggt
tcaaatgatttgcatgtaaacgcaaagattaaagtgcgtgttactgagacacatatcgat
gaagaaggcaacgaaaccaacaaagaagttagtctaaaggaaactgttgctggtcgtctg
cttatctggaatatcatgccaaatggtatggcgtttgatgagtgcaaccaagagatgact
aagaaaaacatctcacgtttgattaactcttgctatcgtaagatgggcgccaaaggtagt
gtcatgttcgctgaccaattaatgtacctagggttcgctcaagcgacactatctggtgta
tctgttggtatcgatgacatggtcattccaccaagcaaaaagcagattattgaagttgct
gaggccgaagttcgtgaaattgaagaccagtttgagcaaggttttgtgactgctggtgag
cgttataacaaagttgtcgatatttggtcacgtactaacgacaaagtcgctaaggcgatg
atggacaacttggctactgataaagtaatcaatgctcaaggtgaagaagaagagcaaaag
tcttttaactcaatctatatcatgtcggattcgggtgctcgtggtagtgctgcacagatt
cgtcagcttgctggtatgcgtggtttgatggcaaagccggatggctcaattatcgagacg
ccgattaaagctaacttccgtgaaggcttaacggtacttcagtactttatctcaacgcat
ggtgcgcgtaaaggtctagcagataccgcattgaaaacggctaactcaggttatttgact
cgtcgtttggttgatgtcgcacaagatttagttattactactgatgactgtggtactgat
gtaggcttgctcatgacgccgcacatccaaggtggcgagatcattgaaaaacttggtgat
ctagtacttggacgtgttacagcgcgtgatgtcacgtacaatgatgatgattcaaaaatc
ttggttccagcgggtactttgatcgatgagcattgggttaatgtgcttgacgaaaatgca
atcgatgacatctgggtacgctcggtgattacttgtaacgtagcacatggtgtttgttca
cagtgctatggtcgtgaccttgctcgtggtcataaagtgaatatcggtgagtcagttggt
gtcatggcagcacagtctatcggtgagcctggtacacagcttacgatgcgtactttccac
gtgggcggggcagcaagctcagcatcagtggataatagcatctcagtccgtaatgctggt
caagcgcatttcgagaatatgaagacagttcagcatactgacggtcacttagttattgtt
tctcgttctgctgaaattgccttaactgatgagcttggtcgtgagcgtgagcgttataaa
gtaccttatggttcaagtgtattagtgaagcatgaagatcaggtcgaaggtggccagact
atcgctaaatgggatccgcatacgcatccaatcatcactgaatttgctggtacagcacgc
tttagtgaaattactgatggtatgacggcaactgttaaagttgatgacgcgactggtatg
agctcatttgagattcttgctactcgtgaccgttcaagtactgcaaaagacttacgtcct
gccattatcttgaatactgacgaaggcaaagaagtaatttacttcttacctgctgaaacg
atcattcgtgttagcgatggtgaaaaagtagcggcaggttcaatcttaggtcgtgtacca
caagctacttcaggtactaaagatattaccggtggtctaccacgtgttgctgatttattc
gaagcacgtcgtccaaaagatcatgccatcatggcagagatgactggtgtagtcagcttt
ggtaaagaaactaagggcaaaaatcgctttattatcaccaatgaagatggtgaagtacat
gaagagctaatccctaaatggcgtcaaattaacgtctttgaaaatgagacagtagctcgt
ggtgaagttatcgctgatggtccacaaaacccacacgatatcttacgtctaaaaggccag
acagcacttgctaactatatcgttaacgaagtacaggatgtttatcgtctgcaaggtgtg
aagattaacgacaagcacattgaagttatcattcgccaaatgctacgcaaagttgagatt
actgatggtggtgattcaagtcacttcaaaggcgatcaagctgaatatgctgatatcaga
gcacttaacgcaaaactagaagcggaagataaattcccagtccagtatgagcgtcagcta
cttggtatcaccaaagccagtcttgcaacagaaagctttatctcagcagcgtcgttccag
gaaacgactcgtgtcctaactgctgctgccgttactggtaaggtagatgaactacgcggt
ctgaaagagaacgtcgttgttggtcgcctaattccagcgggtactggtcttgcttatcat
aaagctcgtaaagagaaagctgaacagaagctgcttgataaagacattaatgcagcgttt
gatatgactgctagcactgatagcaaagactttgccagttttgatgaagccttcgcacaa
gagctcaaccaagacagtcagtcttaa
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