Pseudohongiella spirulinae: PS2015_1066
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Entry
PS2015_1066 CDS
T04158
Name
(GenBank) Exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pspi
Pseudohongiella spirulinae
Pathway
pspi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pspi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PS2015_1066
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspi03400
]
PS2015_1066
Enzymes [BR:
pspi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PS2015_1066
DNA repair and recombination proteins [BR:
pspi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PS2015_1066
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
Viral_helicase1
AAA_11
ResIII
Motif
Other DBs
NCBI-ProteinID:
ALO45730
UniProt:
A0A0S2KCP0
LinkDB
All DBs
Position
complement(1155646..1159350)
Genome browser
AA seq
1234 aa
AA seq
DB search
MTQKLMPLTFPLYGSQLIEASAGTGKTYTIALLYTRLVLQHGQAQAFQRLLTPEEILVVT
FTDAATQELKDRIRARLADAALCFLANDPCSDSSLQALRDSYPSDKWPECARLLTQAVQS
MDQAAVSTIHGWCYRMLREHAFDSGTLFQQTLTTSMQDIHAELIRDYWRQHFYSLSAETA
ALIADTFKSPDDLLQAVRPLLNKTNTVITYRDQPLPIADSLSETLNPFVNANSTVNNELA
RARSLWLQHWDELNTLLDQLRPGMNLKSYAEAKNDADFAQLKQQLLDWAQGEASPKNLLR
FGSTGMKLKNGYTAPDHIAMHAIDRWAESVKLANDENQPTPRSLIMQHARHWLEQALQQR
IQTRAELGFDDLLLQLDRALQGPRGDHLAAQIRAEFPVALIDEFQDTDPLQYRIFDRIYR
IADNRKEQALILIGDPKQSIYSFRNADIHTYLTARQATSGRHYHLDTNYRSSQALVDSVN
TCFGHAESFPEGAFLFKTGNENPVPFLPVNANGRREVLSTPSGSAPALTFLNLQCSEPEN
GVVSKTQYLQDMAAICAAQIADILDSKQHWTFTGDDSSPVRPSDIAILVRDFNEASSIRQ
ALQQQGLASAYLSDRESVFASAQADDMLRWLHACAEPGDERLIRAALATRSLDLPLWQLQ
AYYLNEQSWEQQTELFRQLQQRWQRDGVLPMLRELMQHYKLARRLQRQPDGERALTNLLH
LAEYLQQASVNHVGQQALIRHLSDMLENPGQEEILRLESDEDLIRVVTIHKSKGLQYPLV
FVPYAANWRDQKSDKPFTISDPDKPSQRKLEISKSDKHSDSRQQADNERLAEDMRLLYVA
MTRAIHALWIGVGLVSQGSNKSSLTHRSGIGYLLSGGNQLDSISLSQTLTTLAEQCDKIT
VQNISEYPPVPESSQWRQPASPASTARKPAATARHRPPTPWWISSYSAIKAGAHDSEPEA
ASIDQALEEQQSGRDVSAIPLSRGKREFNRLDPGLHGFPRGPREGTFLHDLLEWACDAGF
EQAALNDDERLSVIDKRCQVRDWKDEKTRLDGWLKHFLQCRFRLRDGSDFTLGELKEVQA
EMEFLFAANRVDTMQIDQLCTRFLMPGAPRPPLQAAALNGMIKGFIDLTFCLNGRYYVAD
WKSNHLGRTDADYHPEALQQAVLQHRYDVQYAIYLLALHRLLRSRLSDYHYDQHIGGAVY
FFLRGWQSESQGLVFDRPAAEFIDRLDQIFSGGL
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgacacaaaagctgatgcctttaactttccccttgtacggtagccagttgattgaggcc
agcgcgggcacgggcaaaacctataccattgcgctgctttacacacgactggtcctgcag
cacggccaggcgcaggccttccagcgcctgctgacacccgaagaaattctggtggtaaca
tttactgatgccgccacccaggagctgaaagatcgtatccgggcccgcctggcggacgct
gcactatgctttctggcaaacgatccctgcagcgattcttcactgcaggctctgcgcgac
agttacccgagtgacaaatggcccgaatgcgccagactgttaactcaggcggtgcagtcc
atggatcaggcggcagtctcaaccattcacggctggtgttatcgcatgctgcgcgaacac
gcattcgacagcggcaccttgtttcagcaaacgctgaccaccagcatgcaggatattcac
gcagaactgattcgggattattggcgtcagcatttttatagtctatcagccgagaccgcc
gctttgatcgcagatacgttcaaaagccctgatgatctgctacaggcggtccggccactg
cttaataaaaccaatacggtcatcacctaccgggatcagccactgcctatcgccgattca
ctgagtgagacactcaatccatttgtaaatgccaacagtaccgtcaataacgaactggca
agagcacgctcgctgtggttgcagcattgggatgaactcaacacattgctggatcaactg
cggcccggaatgaaccttaagtcctacgccgaagccaaaaatgacgccgacttcgcgcag
ctaaaacagcaacttctggattgggcgcaaggcgaggccagccccaaaaatctgcttcgt
tttggctcaacaggcatgaaactgaaaaacggctacacggcgcctgatcatatcgccatg
cacgctattgatcgctgggctgaatcggtgaaactggcaaacgatgaaaatcaacccacg
cctcgctcactgatcatgcagcacgcccggcactggctggagcaagccctgcagcaacgg
attcaaacgcgggcagaactgggttttgacgatctgctgctgcaactggatcgggccttg
cagggaccccgcggtgaccacctggcggcccagatcagagccgagtttccggtcgcattg
atcgatgagttccaggacaccgatcccctgcagtaccggatctttgatcgcatctaccgt
attgcggataacagaaaagagcaggctctgattctgattggtgatcccaagcaatccatt
tattcgttccgcaatgccgatattcatacctacctgacagcacgccaggcaacgtctggc
cgacactatcacctggacactaattaccgatccagtcaggccctggtagacagtgtaaac
acctgtttcggtcatgctgaaagttttccggaaggcgccttccttttcaagactggtaat
gagaaccctgtaccctttttgcccgttaacgccaacggccgtcgtgaagttttaagcaca
ccatctggttccgccccggcactgacttttttgaatctgcaatgttcagaaccggagaac
ggtgtagtcagtaaaacacaatacctgcaggatatggcagccatctgtgcggcacaaatt
gccgatattctggacagcaaacaacactggacatttacgggtgatgacagctcaccagtc
agacccagcgatatagccatcctggtcagagacttcaatgaagcctcgtcaatccggcag
gcgctgcagcagcagggcctggccagcgcctatctatcggatcgtgaatcggtgtttgca
tcggctcaagccgatgacatgctgcgctggttgcacgcttgtgccgagcccggtgatgag
cgtctgatccgggcagcactggccacccgctctctggatctgcccctgtggcaactgcag
gcgtactatctgaatgaacagtcctgggagcagcagactgaactgttccgtcaattgcag
cagcgttggcagcgcgacggtgtactgcccatgctcagagaactgatgcaacactataag
ttagcccggcgcctgcagcgccagcccgatggcgaacgcgcgcttaccaatctgttacac
ctggctgaatatctgcaacaggcgagtgttaaccacgtgggacaacaggcgcttattcga
catctgagtgacatgttggagaatcccggtcaggaagaaatactgcgtctggaaagcgat
gaggatctgattcgagtggtcacaatccataaatccaagggtttacagtaccctctggta
tttgtgccctatgcggccaactggcgcgaccagaagtcagacaagccattcacgatttcg
gaccctgacaaaccttcgcagagaaagcttgaaatcagcaaaagcgacaaacacagtgac
agtcgacagcaggccgataacgagcgtctggctgaagacatgcgtctgctgtatgtggct
atgacgcgagccatacacgccctgtggattggtgtgggactggtttcacaaggcagcaac
aaaagttcgctcactcacagaagtggcattggctacctgctgtctggcggcaatcaactg
gacagcatcagcctcagccaaaccctgacaacgctggctgaacagtgcgataagatcact
gtgcagaacatcagcgaatatccgcctgttcctgaatcttcgcaatggcggcaaccagcc
agcccggcgtccactgcgcgcaaaccagcagccacggcccggcaccgcccgccaacgccc
tggtggatctccagttattcggccattaaagcgggtgcacatgacagcgaaccggaggcc
gccagtatcgatcaggctctggaagaacagcagtcaggccgtgatgtcagcgccatccca
ttgagcagaggcaaacgtgaattcaatcgtctggatcccggactgcacggatttccacgc
ggtccaagagaaggcacgttcctgcatgatctgctggaatgggcctgcgatgccggcttc
gaacaagccgcactgaatgatgatgaacgactgtcggtcattgataagcgctgtcaggtc
cgtgactggaaagacgaaaaaacgcgactggatggctggctgaaacactttttacaatgc
cgcttcaggctccgtgatggcagcgatttcacgctgggagagttaaaagaagtgcaggct
gaaatggagtttctgtttgcagccaaccgcgttgataccatgcagatcgatcaactctgc
acccgatttctgatgcctggcgcacctcgtccgccgctacaggcagccgcactgaatggc
atgataaaaggttttatcgacctcaccttctgcctcaatggtcgttattatgttgccgac
tggaagtccaatcatctgggccgcacagacgccgactatcaccccgaagcgctgcagcag
gcagtcctgcaacaccgttatgacgttcaatacgccatatatctgctggctctgcaccgc
ctgctgcgcagccgtctgagtgactatcattatgatcagcacatcggtggtgccgtgtat
ttctttctgcgtggctggcagtcggaatcacagggcctggttttcgacagaccagccgcg
gaatttatcgatcggcttgaccagatcttcagcggaggactttga
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