Pseudohongiella spirulinae: PS2015_1250
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Entry
PS2015_1250 CDS
T04158
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pspi
Pseudohongiella spirulinae
Pathway
pspi03410
Base excision repair
pspi03430
Mismatch repair
pspi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pspi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PS2015_1250
03430 Mismatch repair
PS2015_1250
03440 Homologous recombination
PS2015_1250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspi03400
]
PS2015_1250
DNA repair and recombination proteins [BR:
pspi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PS2015_1250
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PS2015_1250
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PS2015_1250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
ALO45909
UniProt:
A0A0S2KCJ7
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All DBs
Position
1361254..1362996
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AA seq
580 aa
AA seq
DB search
MLIERRPTRISDALQASLPPLLARLYGARNITDPTELELSAGRLLPPGDLLGLSQAVELL
CQMLEQQGRVLVVSDFDVDGATSCAVVIRALSQMGFQHLDYIVPDRFTYGYGLSPEIVDL
AVERHPDLIITVDNGISSIDGVDRARLAGIKVLITDHHLPPEDLPAADAIVNPNQRDCEF
ASKALAGVGVAFYLMLALRARLRETGWFEKNGLAEPRLADLLDLVALGTVADVVALDQNN
RILVHEGLRRIRAGHACAGILALLELSGRNRSNLQASDLGFAVAPRLNAAGRLEDMSLGI
ACLLTDDPDSARRVARQLDTINTERKRIEADMREQALQTMNDLQAEMLSGQAALPAALCL
YNPDWHQGVAGILASRVKEQFHRPVIIFANAGADADGNGELKGSARSIPGLHIRDLLDSV
ASRHPGLISKFGGHAMAAGLSLPESNLSAFIEAFQQAAAGQLDDAALQQKVLSDGELDID
AFSLQTAELLRQAGPWGQGFPAPLFDGEFSLIDQRLVGGFHLKMIVSPDGGQTMLDAIAF
NIDSNVWPDPSKRKVTLVYRLDVNEFRGQQQLQLLVEHLL
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgctgattgagcgacgtccaaccaggatttccgacgcgctgcaggcgagcttgccgccc
ttgctggctcgcctttacggtgccaggaatatcactgatccgacggagctggagctgagt
gctgggcgtttactgccgcccggtgatctattggggctatcgcaggccgtcgagctgtta
tgccagatgctggagcagcaggggcgtgtgcttgtggtatcagactttgatgtcgatgga
gccaccagttgtgccgttgtcattcgtgctttgagccagatgggttttcagcatctggac
tacatcgtaccggatagatttacctacggttatggtctcagtcctgagatcgttgacctt
gcggttgagcgtcatcctgatctcatcatcactgttgataatggtatttccagcatagac
ggtgttgatcgtgcccgacttgccggtattaaagttctgattactgatcatcatctgcct
cccgaagacttgcccgccgctgacgccattgttaacccgaatcagcgtgattgtgagttt
gccagcaaggctctggccggggtgggcgtggcgttttatttgatgctggcattacgtgcg
cgcttgcgtgagacaggttggtttgagaaaaatggattggctgaaccgcgcctggccgat
ttgcttgacctggtagcgcttggaacagttgccgacgtggtggctctggatcagaataat
cgcattctggttcatgaagggctgcgccgaatacgcgcgggccatgcctgcgcaggcatt
ctggcactactggagttgtccgggcgcaatcgttcgaatctgcaggcatccgatctggga
tttgccgtcgctcccaggctaaatgccgctggacgactcgaggacatgtcgctgggtatt
gcctgtctgctaaccgatgaccctgattctgcgcgccgcgtagcccggcaactggatact
atcaatacggaacgcaaacgcatagaggccgatatgcgtgagcaggctctgcagacgatg
aatgacctgcaggcagaaatgctcagcggccaagctgcgttaccagccgcgctgtgtctg
tacaacccggattggcatcagggtgtggcaggtatactggcttcgcgagttaaggaacaa
ttccatcgaccggttatcatttttgcgaatgcgggtgctgatgccgatggtaacggggaa
ttaaaagggtcggccagatccattcccggacttcatatacgggatctgctggacagcgtc
gccagcaggcatccggggctcatcagcaagtttggcggccacgccatggctgctggactg
agtttgcctgaatctaatttgtcggcttttatagaagcgtttcagcaggcggcagccggg
caacttgatgacgctgccctgcagcagaaagtattgagtgatggagagcttgatatcgat
gcgttttcgctgcaaacggccgagctgctgcgtcaggccgggccatgggggcagggcttt
ccagcaccattatttgacggtgaattctcattgatcgatcagaggctggttggtgggttt
catctcaagatgatcgtcagtccggatggcgggcagactatgcttgatgcaattgcattt
aatatcgactccaatgtgtggcccgacccatcaaagcgcaaggtaacgctggtttatcgg
ctggatgtgaatgagtttcgtggtcagcagcagcttcaactactggtcgaacaccttctt
tga
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