Pseudohongiella spirulinae: PS2015_1474
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Entry
PS2015_1474 CDS
T04158
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pspi
Pseudohongiella spirulinae
Brite
KEGG Orthology (KO) [BR:
pspi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pspi03016
]
PS2015_1474
Enzymes [BR:
pspi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
PS2015_1474
Transfer RNA biogenesis [BR:
pspi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PS2015_1474
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
ALO46131
UniProt:
A0A0S2KDE5
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All DBs
Position
1624010..1625176
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AA seq
388 aa
AA seq
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MNDSVNAVDYTFVSLSRELDQLCDKWSHLPVLALDTEFIRVNTFYPKPGLIQVCDGQDVY
LLDPLDIDDFSSFKALLNNPAICKVLHSSSEDLVLFLNFFGMLPEPLFDTQKAAAFLGYG
PSISYQNLVNDMTGIALGKGETRSNWLHRPLSEQQLHYAALDVKYLPELYKRLCDQLHAR
DRLAMFQAECAAMIDTAVRIEDEASWPNLYQQMGAAWRLNTQQLGVLQLLGIWREQQARL
RDTPRTWVARDADLIQIAERMPETLSELKSLKEMSRNLYNKDADAILALVCKAEPVPQDV
LENIDGAPLNHHQRVLLKKMQKAVGLIAKQSGIAEELLARKKVLIRILRLNENVEDWNMI
RWPSEVRVWQQTLLHEPIAQALGVKSDA
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgaacgactcggtaaacgcagtagactacacattcgtcagcctctcccgggagctggat
caattgtgtgataagtggagtcacctgcctgtactggctcttgacactgaatttattcgg
gtcaataccttttatccaaaaccaggtctgattcaggtctgtgatggtcaggatgtttat
ttgctggatccacttgatatcgatgacttttcatcattcaaggcgctattgaataatccg
gccatttgtaaagtgctgcattcttcttctgaggatctggttttgtttctgaacttcttc
gggatgctgccagagcccttgtttgatactcagaaggccgctgcctttctgggatacggc
cccagtatcagctaccagaatctggtcaatgatatgactggcattgcacttggaaagggg
gaaacccgctcaaactggctgcatcgccctctcagcgagcagcaactccactatgctgca
ctggatgtaaagtacctgccagagttgtataaacgcttgtgtgatcaattgcatgcgcgc
gatcgtcttgcaatgtttcaggccgagtgtgctgcaatgattgatacagctgttcgtatc
gaagatgaagcctcgtggccaaatctatatcagcagatgggtgccgcctggcgtctgaac
acgcagcaattgggtgtactgcaactccttggtatctggcgtgaacaacaggcacggctt
agagatactcccaggacctgggtggcccgggacgccgatctcattcagattgctgaacgg
atgccggaaacgctgtcggagcttaagtctctgaaagaaatgtccagaaatctttacaac
aaagacgcagatgcgatactcgccctggtatgtaaggctgaaccggtgcctcaggatgtg
ctggagaatatcgatggggcacctctcaaccatcatcaaagagtattgttaaagaaaatg
caaaaagcggttggtcttatagccaaacaaagcggtatcgctgaagaattgctggcccgt
aaaaaagtattaatccgtatattacgactcaatgaaaatgttgaagactggaatatgatc
cgttggccgtctgaagtccgtgtatggcagcagactttgctacacgagccgatcgcacag
gccctgggagtcaagagtgatgcctga
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