Pseudohongiella spirulinae: PS2015_170
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Entry
PS2015_170 CDS
T04158
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pspi
Pseudohongiella spirulinae
Pathway
pspi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PS2015_170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspi03019
]
PS2015_170
03009 Ribosome biogenesis [BR:
pspi03009
]
PS2015_170
Enzymes [BR:
pspi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PS2015_170
Messenger RNA biogenesis [BR:
pspi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PS2015_170
Ribosome biogenesis [BR:
pspi03009
]
Prokaryotic type
rRNA helicases
PS2015_170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALO44865
UniProt:
A0A0S2K954
LinkDB
All DBs
Position
188022..190127
Genome browser
AA seq
701 aa
AA seq
DB search
MRALFVNSPFIASSRQQATIMSSTTPDLGFAELNLPAFLLETLGRVGYEKPSPIQQATIP
ALLDGNDIVGMAQTGTGKTAAFALPILARIDVNNPKTQALVLCPTRELAIQVAEAFQTYA
EGLRGFHVLPVYGGQDMSRQLQALRRGVHVVVGTPGRLLDHLSRRSLDLKHINTLVLDEA
DEMLRMGFIDDVEMILQQTPDQRQVALFSATMPPAIRNVADKYLKDPKEVRIKSATSTNA
DIEQFYWLVQGTNKLDALTRMLEVEEFDGMIVFVRTKNSTVELADKLNARGFSAAPLNGD
MNQQLRTRTVEQLKNGQLDIVVATDVAARGLDVERISHVMNYDIPHDNEAYVHRIGRTGR
AGRSGKAILFVAPREQRMLQSIERTTRKKITRMELPTRGDLILKRSQQFKQTIANALEQD
NLDFFHVLVADLIQEYGCSLEDAAAAMAFLLQKDRPLEPSVKDVVNKAPRQPFKDDDDRP
ARKVRSKVPARDDEAALFLDGDDHSARAARKRRDERIYEDGVEVGMEHYRLAVGHTHGVT
PREIVGAIANEGGIEGRFIGRIQIFDDYTTIDLPEGMPDEVFQTLQRTRVCGQALNLART
SASQAAPASRGRFERNDRPERRPRRDDGDTPRKPRARAADGDAPRKPGKPRTSTRRDAFI
EPTRAPRGAKAADKPKEKKRAGPKKRVNKDKGKRRVTSKKV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgccctttttgtgaattccccatttattgcttcttcacgccagcaggcaacgatt
atgtccagcaccacgcccgatctcggttttgccgagctcaatcttcccgcattcctgtta
gaaacactggggcgcgttggttacgagaaaccatcgcccattcagcaggccacgattccc
gcgctgctggatggtaatgatattgtgggcatggcgcagaccggtacgggcaaaaccgca
gcctttgcattgccgattctggcgcgtattgatgtgaataacccgaaaacccaggcgctg
gtactttgcccgacgcgtgagctggccattcaggtggccgaagccttccagacctatgcc
gaaggcctgcgcggcttccatgtacttccggtttatggtggtcaggacatgagtcgtcag
ctacaggcgctgcgccgtggcgtgcatgtggtggtgggtacgcccggtcgtttgctggat
cacctgagccgtcgatcgctggatctgaaacacatcaataccctggtgctggatgaagcc
gacgaaatgttgcgcatgggttttattgacgatgtggaaatgattctgcagcagacgcct
gatcaacgtcaggttgcgttgttttctgccaccatgccgccggccatccgcaatgtcgcc
gacaaatatctgaaagaccccaaagaagtacgcatcaaaagtgccaccagcaccaacgcc
gatatcgaacagttttactggctggtgcagggcaccaacaagctggatgcgctgacccgt
atgctggaagtcgaagagttcgacggcatgatcgtctttgtgcgcaccaaaaacagcacc
gtagaactggccgataagctgaatgccaggggtttctccgcagcgccgctgaacggtgat
atgaaccagcaactgcgaacgcggactgttgaacagttaaagaacggccagttggatatc
gtggtggcaaccgatgtggcggcgcgtggtcttgacgtagagcgtatcagtcacgtcatg
aattacgatattccgcatgacaatgaggcttatgtacaccgaattggccgcaccggccgc
gccggccgcagtggcaaagccattctgtttgttgcaccgcgcgagcagcgcatgctgcaa
tccattgagcgaaccacgcgcaagaaaattacccgaatggaactgccaacccgtggcgac
ctgattctcaagcgcagccagcagttcaagcagaccattgccaatgccctggaacaggat
aatctggatttctttcatgtgctggtcgctgatctgatccaggaatacggttgttcactg
gaagatgcggcagcagccatggcatttctgttgcagaaagatcggcctctggagccgtct
gtcaaagatgttgtcaacaaggcgccacgacaaccatttaaagatgatgatgatcgaccc
gcgcggaaagtgcgcagcaaagtgccggcgcgcgatgatgaggcggcgttattcctggac
ggagatgaccattctgcccgggcagcgcgcaagcgtcgggacgagcgtatttatgaggac
ggcgttgaagtaggcatggagcactaccgcctggccgtaggtcacacacatggcgtcacc
ccccgtgagattgtgggtgccattgccaatgagggtggcattgaaggtcgctttattggc
cgcatccagatctttgatgactacactactatcgacctgccagaaggcatgcctgatgag
gtttttcagacactgcagcgcacccgtgtgtgcggtcaggcactgaatctggcgcgcacc
tctgcgtcgcaggccgcacctgccagtcgtggacggttcgaacgcaacgaccggcctgag
cgccgaccgcgccgggatgatggcgatacacctcgcaaacccagagcgcgcgcggcagat
ggcgatgctccacgcaagccaggcaagccaagaacgagcacacgtcgtgatgcctttata
gagcctacgcgggcgccgcgcggcgcaaaggcggctgacaaacccaaagagaaaaagcgc
gccggtcccaagaaacgtgtcaacaaggacaagggcaagcgacgagtcacaagcaaaaag
gtttaa
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