Pseudohongiella spirulinae: PS2015_1824
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Entry
PS2015_1824 CDS
T04158
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pspi
Pseudohongiella spirulinae
Pathway
pspi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PS2015_1824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspi03019
]
PS2015_1824
03009 Ribosome biogenesis [BR:
pspi03009
]
PS2015_1824
Enzymes [BR:
pspi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PS2015_1824
Messenger RNA biogenesis [BR:
pspi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PS2015_1824
Ribosome biogenesis [BR:
pspi03009
]
Prokaryotic type
rRNA processing factors
PS2015_1824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ALO46473
UniProt:
A0A0S2KE13
LinkDB
All DBs
Position
2000551..2003595
Genome browser
AA seq
1014 aa
AA seq
DB search
MKRMLINATQEEELRVALVDGQKLYDLDIENRTRVQKKASIFKGRITRVEPSLEAAFVDF
GAERHGFLPLKEIAPEYFSNKGDGGRVNIKEAVAEGTEVIIQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRAGGISRRIEGDERSEIREAINSLNIPDGMGIIVRTAGVGKSQEELQ
WDMDYLLSLWRSITEASAEKKAPFLVYQESNVIIRCIRDYLRQDIGEVLFDTKESYEEAL
NFVRQVMPHYESRIKHYQDALPLFNRYQIENQIESAFQREVKLPSGGSIVIDPTEALISI
DINSSRATRGSDIEETALNTNLEAADEIARQLRLRDMGGLVVIDFIDMSSTRNQKEVENR
MRDALEADRARVQVGRISRFGLLEMSRQRLRPSLEETNAVVCPRCSGQGTIRDVKSLCLS
ILRILQEEANKKKSAEIRAIVPLNVASYLLNEKRNVVAGIEQQSKTRLLIIPNPNMETPH
FDIQSLSPQEGGVSLASFEIETDQDQSEEIVQAQKPLQVQQAAVQAPTIAQAPAPRPVAA
EKQRPAEKKGFLGSLLSVFGGLFSGAANDEESETDDKQKERSNNNRSRNNNRRDGSNRNR
NSRGGRGGNRGDRSERSDKRDGDNAQDDSSRGTQQPQKAAEERSDKENKDGADKPSRGRR
RGGRNRNKSDEEKAGNRQGSKPDQEASEGDEQENSNRRPRGERKPRNTTKRVRGPHPDGE
QATEQSADEQQTAEQAAVPQAEPVTEQAPAAAAPAEQSESAEAGETSPQTDASTAEDADS
TEKPVKRRRSRGGRSRRGSKNKDVSADNASADEASGDETSADNAGADSASSDSAEAEDTV
ASQAPAEQTSADEAMSEETAAVVKKVAKAAKAASAKQAKAARDSKAKPESSSDEPVATEQ
ATETSAETTESAEMPAAADANAPETADIKEKAPESPQASAQPETESKADTAAETNTEAEQ
PVQTELAVETETSETKTEPEPTPAPAPARPTGRAPNDPREIRRRQQQEKQQQES
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaatgttaatcaatgcaactcaggaagaagagttgcgtgttgccctggtcgat
gggcaaaaactttacgacctggatatcgaaaatcgcacccgggttcagaaaaaagccagc
atattcaagggccgcatcacccgggttgaacccagtctggaagcggcctttgttgatttt
ggcgccgagcgccacggttttctgccgttaaaggagattgccccggaatatttcagcaac
aagggtgacggcggccgcgtcaacattaaagaggccgttgccgaaggcaccgaagtcatc
attcaggtggaaaaagaagagcgcggcaacaagggcgcagcactgaccacctttatcagc
ctggctggacgctacctggtgctgatgcccaacaacccgcgcgccggcggcatttcgcgc
cgcattgagggcgacgagcgctcagagatccgcgaagccatcaacagcctgaacattccg
gacggcatgggcatcattgtacgcaccgccggcgtgggcaaaagtcaggaagaactgcag
tgggatatggattatctgctgtcactgtggcgctccattaccgaagcctcggctgagaaa
aaagcccccttcctggtttatcaggaaagcaatgtcattatccgctgcatccgtgactac
ctgcgccaggacatcggcgaggtactgtttgacaccaaagaatcctacgaagaagcgctg
aactttgtgcgccaggtcatgccgcactacgaatcacgcatcaagcattatcaggatgcg
ctgccgctgtttaatcgctatcagatcgagaatcagattgaatcggccttccagcgcgaa
gtgaaactgccctccggcggttccatcgtgattgatccgaccgaggcactgatctccatc
gacatcaactcctcgcgcgcaacccgcggttcagacatcgaagaaaccgcactgaacacc
aacctggaagcggctgatgagattgcccgtcaactacgtctgcgtgatatgggcggcctg
gtggtcatcgactttatcgatatgtcgtctacccgcaaccagaaggaagtggaaaaccgc
atgcgtgatgcgctggaagcggatcgcgcgcgtgtgcaggtgggccgtatttcccgtttt
ggtctgctggagatgtcacgtcagcgtctgcgtccctctctggaagagaccaatgccgta
gtttgcccgcgctgcagcggccagggcacgatccgtgatgtgaagtcactgtgtctgtcc
atcctgcgtattctgcaggaagaggccaacaagaagaaaagcgccgagatccgcgccatt
gtgcccttgaatgtcgcctcttacctgctgaacgaaaagcgcaatgtggtggctggcatc
gagcagcagagcaagacccgcctgctgatcatccctaatccaaacatggaaacaccgcac
tttgacattcagagcctgagcccacaggaaggcggcgtgtcgctggccagcttcgagatc
gagactgatcaggaccagagcgaagagattgtgcaggcgcagaagcctctgcaagtgcag
caggccgcagtgcaggcacctaccattgcccaggcaccggcgcctcgtccggtagcggct
gaaaagcagcgccctgccgagaaaaaaggcttcctgggttcattgttgtctgtgtttggc
gggctgttctcaggtgccgccaacgacgaagagtcggagactgacgacaagcagaaagag
cgcagcaacaataatcgcagtcgcaacaacaaccgtcgtgacggcagcaatcgcaaccgt
aacagtcgcggcggacgaggtggtaaccgcggtgatcgatcagagcgcagtgataagcgc
gatggcgataatgcgcaggacgacagttcgcgcggcactcagcagccccaaaaagcggct
gaagagcgcagcgacaaagagaacaaggacggcgcagacaaaccttcgcgcggtcgacgt
cgcggcgggcgcaatcgcaacaagagcgatgaggagaaggccggcaatcgtcagggcagc
aagccggatcaggaagcgtccgagggcgacgagcaggaaaacagcaatcgccgtccgcgc
ggtgagcgcaaaccacgcaacaccaccaagcgcgtgcgtggaccgcatcccgatggcgag
caggccactgagcagtcagcagatgagcagcaaaccgctgaacaggccgcagtgcctcag
gcagagccggtcactgagcaggccccagccgctgccgcaccggccgagcaatccgagtcc
gctgaagcaggcgaaacgtcgccacagaccgacgccagcaccgctgaagacgccgattca
actgaaaagcccgttaaacgtcgccgcagccgtggtggtcgttcacgtcgcggcagcaaa
aacaaggatgtgtcagccgacaacgcaagcgccgatgaggccagcggcgatgagacgagc
gccgataatgccggcgcagactccgcaagctctgacagcgcagaggctgaagacaccgtc
gccagccaggcacccgctgagcaaacctctgcggacgaagccatgagcgaagaaacagcc
gccgtcgtcaagaaggttgccaaagcggccaaggccgccagcgccaaacaggcgaaggca
gcacgtgacagcaaagccaaaccggaaagcagcagtgacgaaccggttgcaacagagcag
gcaacggagacttcagcagagacaactgagtccgctgagatgccggcagctgccgacgca
aatgcgccagaaactgcagacataaaggaaaaagcgcctgaatcgccccaggcatctgca
cagccagagacagaaagcaaagctgacactgcagcggaaaccaacactgaagcagagcaa
cccgttcagactgaacttgccgtagagacagaaacgtcagaaaccaaaacagagcctgaa
cccacacctgcccccgctccggccagacccaccggccgcgctccgaacgacccgcgtgaa
atacgccgtcgtcagcagcaagagaaacagcagcaggaatcttga
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