Pseudohongiella spirulinae: PS2015_2562
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Entry
PS2015_2562 CDS
T04158
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pspi
Pseudohongiella spirulinae
Pathway
pspi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PS2015_2562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspi03019
]
PS2015_2562
Enzymes [BR:
pspi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PS2015_2562
Messenger RNA biogenesis [BR:
pspi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PS2015_2562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
CMS1
Helicase_C_2
P-loop_SecA
Flavi_DEAD
DegT_DnrJ_EryC1
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ALO47196
UniProt:
A0A0S2KFT1
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All DBs
Position
2774137..2775414
Genome browser
AA seq
425 aa
AA seq
DB search
MNFEDLGLSATLLKAIHEQGYTEPTPIQAKAIPAIIGGSDIMASAQTGTGKTAGFTLPML
QKLSNGKRAGSNQIRALVLTPTRELAAQVHDSIKTYGVHERIRSAVVFGGVKINPQMALL
RGGLDILVATPGRLMDLHQQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILALLPPKRQ
NLLFSATFSNEIQQLAKGLLNNPQEINVAPRNTTAERIEQIIHPVDKSRKTALLSHLIRS
NNWYQLLVFSRTKHGANKLVQLLEKDGIHAAAIHGNKSQAQRTKVLHQFKNGGLQVLVAT
DIAARGIDIDQLPHVINYDLPDVPEDYVHRIGRTARAGADGKAISLVDQEQHKQLRAIEK
LLKQRLPSAAVPGFEPTARPSAAPAPARRAQPPRRSRPNVPSRRSGFNADRPMSARRDNR
QSQSR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgaagaccttggcctgtcggccaccctgcttaaagctattcacgaacaagga
tataccgaacccactcccatccaggctaaagccatcccggccattatcggcggttctgac
atcatggcatcggcgcaaaccggcaccggcaaaacagccggtttcaccctgccaatgctg
caaaaactcagcaatggtaaacgtgctggcagcaaccagattcgtgctctggtgctgacg
ccaacccgcgaactggccgcacaggtgcatgacagcatcaagacctatggtgttcatgaa
cgcattcgctctgccgtggtattcggcggggtaaaaattaatccgcaaatggctttgctg
cgtggcggactggacatactggtcgccacacccggccgcctgatggacctgcatcaacag
aacgctgtgaaattcgaccaattggagatactggttctggatgaagctgaccgcatgctg
gacatgggtttcattcgtgacattcgcaagatccttgccctgctgccacccaagcgtcaa
aacctgctattttcggcgaccttttccaatgagattcagcaactggcaaaaggcctgctg
aataaccctcaggaaattaatgtcgctccgcgtaacaccacggccgagcgcattgagcaa
atcatccacccggttgacaagtcccgcaagacggcccttctcagccatctgatccgcagt
aacaactggtatcagttacttgttttcagccgtaccaaacatggtgccaacaaactggtt
cagctgctggaaaaagacggcatccacgctgccgccatccacggcaacaaaagccaggcg
cagcgcaccaaagtcctgcatcagttcaaaaatggtggtctacaggttctggtggccact
gatatagccgcccgcggcatcgacattgaccagctgccgcacgtcattaactatgatctg
cccgatgtaccggaagactacgtgcatcgtattggccgcactgcacgggccggcgcggac
ggcaaagccatctcactggtggatcaggagcagcacaagcaattgcgcgctatcgaaaaa
ctgctcaagcaacgcctgccatctgcagcagtgcctggctttgagccaacggcacgaccc
agtgcagcaccagcacccgctcgtcgggcgcagccaccgcgtcgttcacgaccgaacgtc
ccatcacgacgctcagggttcaatgccgatcgccccatgtccgcccgccgggacaaccga
cagagtcagagccggtaa
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