Pseudohongiella spirulinae: PS2015_2953
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Entry
PS2015_2953 CDS
T04158
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pspi
Pseudohongiella spirulinae
Pathway
pspi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pspi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PS2015_2953
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspi03400
]
PS2015_2953
Enzymes [BR:
pspi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
PS2015_2953
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PS2015_2953
DNA repair and recombination proteins [BR:
pspi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PS2015_2953
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
ALO47580
UniProt:
A0A0S2KGW5
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All DBs
Position
3227609..3228427
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AA seq
272 aa
AA seq
DB search
MPELPEVETSRRGIDPYVSGHTVVSSLVRQSSLRWPVAQQITSVLPGQTITHTSRRGKYM
LLHTGHGTLIIHLGMSGSLRIVDKNAPVRAHDHIDLILDSGHVLRYHDPRRFGAMLWSED
SDPLTHDLLRNLGPEPLSDEFDTACLFRRSRGRKVPIKNLIMDSRVVVGVGNIYANEALF
LAGIRPDTPAGRLSRARCERLVTQVRHVIAKAIAVGGTTLRDFVGSDGKPGYFKQSLHVY
GRAGEPCTQCGSVLQEIRLGQRSTVFCRRCQR
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactacccgaagtcgagaccagccgccgcggcattgatccgtatgtatccggc
cacaccgtcgtttccagtctggtcagacaatcaagtctacgctggccagttgcacagcag
atcacctctgtgctacccggccagaccatcacccacaccagccgtcgcggcaaatatatg
ttgctgcacacgggtcacggcacgctgatcattcatctgggcatgtccggaagtctcagg
atagtcgataaaaacgcacctgtgcgtgcgcacgatcacatcgacctcatattggacagc
ggccatgtactgcgctatcacgacccacgacggttcggcgccatgctctggtctgaagac
agtgacccgttgacccatgatttattacgcaatctgggaccggaaccactgtcagatgaa
ttcgacaccgcctgtttattcagacgcagtcgcgggcgaaaggttccaataaaaaacctg
attatggatagtcgagtggtagtgggtgtcggcaatatttacgccaatgaagcactgttt
ctggccggcatacgtcctgatacacctgccggacggctatcgcgcgctcgttgtgagcgc
ctggtcacacaggtcagacatgtcatcgcaaaagcaattgcggtggggggcacaaccttg
cgtgatttcgtgggcagcgacggcaaacccggctatttcaagcaatctctgcacgtctac
gggcgcgcaggagaaccctgtacacagtgcggatctgtgctgcaggaaattcgcctgggc
caacgaagcacggttttctgccggcgatgtcagcgctag
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