Pseudohongiella spirulinae: PS2015_433
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Entry
PS2015_433 CDS
T04158
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pspi
Pseudohongiella spirulinae
Pathway
pspi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PS2015_433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspi03021
]
PS2015_433
03019 Messenger RNA biogenesis [BR:
pspi03019
]
PS2015_433
Transcription machinery [BR:
pspi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PS2015_433
Messenger RNA biogenesis [BR:
pspi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PS2015_433
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
AAA_22
Fungal_virus_P2_C
Spore_III_AA
AAA_25
Mor
AAA
Motif
Other DBs
NCBI-ProteinID:
ALO45119
UniProt:
A0A0S2KAV3
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All DBs
Position
complement(430241..431500)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTDLKTQPIAKLLETAQEMGLENLSRTRKQDIIFAILKKHAKNGEDISGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKDGERYFALLKISEVN
FAKPENSKQKILFENLTPLFPTERLRLELGNGSTEDLSARIIDLTAPIGKGQRGLIVSPP
KAGKTLLLQNIAQSITRNNPECRLIVLLIDERPEEVTDMQRSVRGEVVASTFDEPPARHV
QVAEMVIEKAKRLVEHKEDVVILLDSITRLARAYNTIVPSSGKVLTGGVDAHALERPKRF
FGAARNLEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEIHLDRKIAEKRIYPAINV
RRSGTRREELLTGEEELQRMWILRKILSSMEDVQAAEFIIDKLKDSKTNEEFFNMMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcaccgacctcaaaacccaacctatcgccaaattgctcgaaactgcccaggaa
atgggactggaaaacctctcccggacccgtaagcaagacatcatttttgccatcctcaag
aaacacgccaaaaatggcgaggatatcagcggcgatggtgtgcttgaaatcctgcaggac
ggctttggttttctgaggtcagcagattcatcctatctggccggccccgatgatatttat
gtctcgcccagccagatacgccgctttaatctacgaaccggcgacacgatttcgggcaag
attcgcccacccaaagatggtgaacgttacttcgccctgctcaagatctctgaagtcaac
tttgcaaaacccgaaaattccaagcaaaaaattctgtttgaaaacctcaccccactgttc
cccactgagcgcctgcgactggagctcggtaacggcagtaccgaagatctcagcgcccgc
attattgacctgacagcccccatcggcaaaggccagcgcggcctgatcgtatcgccaccc
aaagccggtaaaactctgttgctgcagaacatcgcgcagtccattacccgcaataatccg
gaatgtcgcctgatcgttctgttgattgatgaacgcccggaagaagtcaccgacatgcag
cgctcagtgcgaggcgaagtggttgccagcaccttcgacgaaccgccggcacgacacgtt
caggtggcagaaatggtgatcgagaaagccaagcgcctggtcgaacacaaagaagatgtc
gtgatactgctcgactctatcactcgcctggcacgcgcctacaacaccatcgtgccgtct
tcaggcaaagttctgaccggtggtgtggacgcccacgcactggagcgccccaagcgcttt
tttggtgccgcacgtaacctggaagaaggcggcagcctgacgatcattgcaaccgccctg
gtagaaaccggttccaaaatggacgaagttatctacgaagaattcaagggaacgggcaac
atggagatccatctggatcgcaagattgccgaaaaacgcatctacccggccattaatgtg
cgccgctccggcacacgccgcgaggaactgctgactggcgaagaagagctgcaacgcatg
tggattctgcgcaagatcctcagctccatggaagatgtacaggcagctgaattcatcatt
gacaagctgaaggatagcaagaccaatgaagaattcttcaacatgatgaaaagaaagtaa
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