Pseudohongiella spirulinae: PS2015_643
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Entry
PS2015_643 CDS
T04158
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pspi
Pseudohongiella spirulinae
Pathway
pspi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PS2015_643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspi03019
]
PS2015_643
03016 Transfer RNA biogenesis [BR:
pspi03016
]
PS2015_643
Enzymes [BR:
pspi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PS2015_643
Messenger RNA biogenesis [BR:
pspi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PS2015_643
Transfer RNA biogenesis [BR:
pspi03016
]
Prokaryotic type
tRNA degradation factors
PS2015_643
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
WHD_RNase_R
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
ALO45326
UniProt:
A0A0S2KB42
LinkDB
All DBs
Position
665452..667989
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AA seq
845 aa
AA seq
DB search
MPRQKKPGKSNNPSFIHDPFASREAEKYENPIPSREFILAVMEEIAEPISYEALCEAFEL
SGDEDQAEALRRRLIAMSRDGQLISNRRGVYGLVDKMELAKGRVQGTKDGMGFFIPNDGS
GDLVLPPNEMARLFDGDIVLARVAGVDRRGRKEGMVVEILERRVTQVVGRFYKDEGFGLV
VPDNRRISHEVIIPEKDTRNAQDGQFVVAVIRNYPDKRRKAIGEVTEILGDHMAPGMEID
VALRSHGIPHEWPKEVTQSVKGLKEEVSKDDHAGRVDLRELPFVTIDGEDAKDFDDAVYC
EPGPRGTAKLFVAIADVSHYVKPDSALDEEAQNRGNSVYFPGHVVPMLPEVLSNGLCSLK
PKVDRLVMVCEMEIGRTGKVNDYKFFEGIIHSHARLTYTEVAEMLEAPDSELRERSQTRL
RSKYADVFPHLEVLYGIYQKLSEARMKAGALDFSSNETRIVFGETRKIAEIVPVVRNSAH
RLIEECMLAANVCTARFLAESGLPVLYRVHEGPNTDKLENLKLFLRELGLVLTKSLKPSP
QDYQRVLQAIEGRPDAHLIQTMLIRSMMQAVYQPDNIGHFGLGFVAYTHFTSPIRRYPDL
LVHRALRYLIRAGKQKANTRAVKGAAKLNKREIYPYQAKDMVHFGELCSMTERRADAASY
DVLDWLKCEYVQDRVGDEFEGTVSSVTGFGLFVQLNDIYVEGLVHITALQNDYYQFDPVR
QLLRGERSGVTYHMGDSVRVRVVRVDLDERKIDLQMLDGHPAGKGPSRGRKSGERKAAAG
RKTAEGKKSAAGRKTVEGKKPAGKKQAAGKKAAGGRRAASRKSPAGADKPAGKGGRKPAG
RSRRR
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgcccagacagaaaaaacccggtaaatccaataatccctcctttatacacgaccccttt
gccagccgcgaggctgaaaaatacgaaaatcccatccccagccgcgagtttattctggcg
gtaatggaagagattgccgagcccatcagctatgaagcgctgtgcgaggcctttgagctg
tctggtgacgaggatcaggcggaggcgttgcgccgccggctgattgccatgagccgcgac
gggcagctgatcagcaaccgtcggggcgtctacggcctggtggacaagatggagctggcc
aagggccgggtgcagggcaccaaggacggcatgggtttctttatacctaatgatggttcg
ggtgatttggtattgccgccgaacgagatggcgcgtctgtttgatggcgacattgtgctg
gcgcgggtggcgggcgtggaccgccgtggtcgtaaagagggcatggtggtcgagattctg
gagcggcgtgttacccaggtggtgggccgcttctataaggatgagggctttggcctggtg
gtgccggacaatcggcgcatcagccatgaggtgatcattccggagaaggatacgcgtaac
gcgcaggatggccagtttgtggtggcggtcatccgcaattacccggacaagcgccgcaag
gcgattggcgaggtcaccgagattctgggtgatcacatggcgccgggcatggaaattgat
gtggcgctgcgcagccatggtattccgcatgagtggcccaaagaggtcacccagtctgtc
aaaggcctgaaagaggaagtcagcaaagacgatcacgccgggcgggtggatctgcgcgag
ctgccctttgtcaccattgatggtgaggatgccaaggactttgatgatgcagtttattgt
gagcccggcccgcgtggcacggcaaaactgtttgtggccattgcggatgtatcgcattac
gtgaagcctgactcggcgctggatgaggaggcgcagaatcgcggcaactcggtctacttc
cccggtcatgtggtgccgatgctgccggaggtgctgtccaacggtctgtgctcgctgaag
cccaaagtcgatcgtctggtgatggtctgcgagatggagatcgggcgcactggcaaggtc
aatgattacaagttttttgaaggtatcattcactcgcatgcgcggctgacttataccgaa
gtggccgagatgctggaggcgccggacagtgaattgcgtgagcgttcacaaacccgcctt
cgcagtaagtatgccgacgtgttcccgcacctggaagtgctgtacggcatctatcagaag
ttgtctgaggcgcgaatgaaggccggcgcgctggatttctccagtaatgaaacacgcatt
gtattcggtgaaacccgcaagatcgcagagattgtgccggtggttcgtaacagcgcgcat
cgtctgattgaggagtgcatgctggcggctaacgtgtgtacggccaggttcctggcggag
tccggcctgccggtgctgtaccgtgtgcatgaggggcccaacactgacaagctggagaat
ctgaagctgttcctgcgcgaactggggctggtgctgaccaagtcgctgaaaccttctccg
caggactatcagcgcgtgctgcaggctattgaagggcgtccggatgcgcacctgatccag
accatgctgattcgctccatgatgcaggcagtgtaccagccggacaacatcggccacttt
gggctgggttttgtcgcctatactcactttacctcgccgatccgccgttatccggacctg
ctggtacaccgtgccctgcgctacctgattcgtgctggcaagcagaaggccaatacccgc
gcggtcaagggtgcggccaagctcaacaagcgggagatctatccttatcaggccaaggac
atggtgcattttggcgagctctgttcaatgactgaacggcgcgccgatgccgccagttat
gatgtgctggactggctgaagtgtgagtacgtgcaggatcgggtaggtgatgagtttgaa
ggcaccgtcagctcggtcaccggttttggtctgtttgtgcagctaaatgatatttatgtt
gaaggcctggtgcacattaccgcgctgcagaatgattattatcagtttgatccggtgcgg
cagctgctgcgcggtgaacgcagtggtgtcacctatcatatgggtgattcggtgcgtgtg
cgggtcgtgcgagtggatctggatgagcgcaagattgacctgcagatgctggatggtcat
ccggccggcaagggcccgtcgcgcggcagaaaatcaggtgagagaaaggctgcagctggc
agaaaaactgccgagggcaaaaagtctgccgcgggcaggaagacggttgagggtaaaaaa
ccagccgggaaaaaacaggcggctggcaaaaaggccgcgggtggccgccgggctgcgtca
cgcaagtccccggcaggcgcagacaaacccgccggcaagggcggtcgcaagccggctggc
agatcgcggagacgctga
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