Paenibacillus spongiae: L1F29_02080
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Entry
L1F29_02080 CDS
T09530
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pspn
Paenibacillus spongiae
Pathway
pspn03420
Nucleotide excision repair
pspn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pspn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L1F29_02080
03430 Mismatch repair
L1F29_02080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspn03400
]
L1F29_02080
Enzymes [BR:
pspn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L1F29_02080
DNA repair and recombination proteins [BR:
pspn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L1F29_02080
MMR (mismatch excision repair)
Other MMR factors
L1F29_02080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
YdjO
Viral_helicase1
AAA_30
BP28CT
Motif
Other DBs
NCBI-ProteinID:
UVI30691
LinkDB
All DBs
Position
complement(473054..475351)
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AA seq
765 aa
AA seq
DB search
MSSIHRFTSLPSGTAGSAIPHAEIASPNIAAQRNNAQDRDAGFFRTLEQSGLTLNKPQLE
AVRHHTGPLLTLAGAGSGKTSVLICRTGYLLAVHGIPASAILLLTFSTKAAAEMRERIAR
LPGLNASAVHQLQARTFHSFFLQLIRRHGNQLDIFHETRRQHILLKQIMRELGLQQDAYQ
PETLLALLSSYKMNLVGLDELPEATDGEKEIKRIFARYEDWKQENGKIDFDDVLLSAYRL
LKQQSDLLRSLQTRFQYVMIDEFQDTNHLQYELIRMIAEPRQNLMVVGDDDQTIYSFNGA
RSEFILHFEKRYPSAKVITLDINYRSTTAIVGLGNEIIRHNKERRPKTLQATKESAVKPQ
YMRPHTADDEADQIITRILQEVQQGTRTYGDFAILYRSSSNNRAILEQLVLKGIPHIDFG
DGQLLYEHWLVKPVVDHLRLSLNRRNFDAMESILPSLYLNREKGMAIIRAKEAIRPKKGP
LVHLLSLPELKDYQKDKITDRLALIKSFVTMKPAQAIIHIRKTFYDAYSEASERHKLTLH
KEMLKELLDELEASAARFDTVEAFIAFIDDVVAKNSDNTRQKLQEQGNRIALMTIHRSKG
LEFPVVCLIGASDGSLPHSSALDTDRMKDVFTRTGSRPISSVALEEERRLAYVAVTRARE
ELFISSPSQYRGKKAAISQFVLAAFQQAAGPSASPKSVHTKTGRHISSPGSKPAGETETV
LAWVCTSPPCIAWTRIDPYKEAHLTSKPCPLCKSAMEKGSKAVPV
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcatacatcgtttcacatccctgccctccggaacggccggctcggctatcccg
catgcggaaatagcatccccaaacattgccgcgcagcggaataatgcgcaggatcgggat
gccggcttcttccgtactttggagcagagcgggttgacgttgaataagccgcagctggaa
gcggtacggcatcatacgggtccgttgctgacgctggcaggagccggctcgggcaagaca
tccgtcttaatctgccggacgggctatctgctcgcggtccacggcatcccggcgagcgct
attctgctcctgacgttctcgaccaaagcggcggccgagatgagagagcgcattgcccgt
ctgcccggtctaaacgcctcggctgtccatcagcttcaggccaggacctttcactccttc
ttcctgcagctgatccgcaggcacggcaatcagctggatatctttcatgaaacccggcgg
cagcatattctgctaaaacaaattatgcgggagctgggcctgcagcaggacgcttaccag
ccggaaacgctgctcgctcttctatcctcctataagatgaaccttgtcggtctggacgag
ctgccggaagcaacggacggggaaaaagaaatcaagcgcatcttcgcccgctacgaagat
tggaagcaggagaacggcaagatcgatttcgacgatgtgctgctcagcgcatatcggctg
ctgaagcagcagtccgacctgctgcggtcgctgcagacgcgattccaatatgtcatgatc
gatgaatttcaggataccaaccatcttcaatatgaattaatccgaatgatcgccgagccc
cggcaaaatttaatggtcgtcggcgatgacgaccagacgatctattcctttaacggcgca
aggagcgaattcattcttcattttgagaagcgctacccgtcggccaaggtcattacgctc
gatattaactaccggtcaaccacagcaattgtcggcctcggcaacgaaattatccggcac
aacaaggagcggcggcccaagaccttgcaagcaacgaaggaaagcgcggttaagccccaa
tatatgcggcctcatacggcggatgacgaagcggatcaaatcatcacgcgtatcctccag
gaggttcagcagggaacacggacatacggcgacttcgctatattataccggtcatccagc
aacaaccgggccatattggagcagctcgtactaaagggaattccacatatcgatttcggt
gatggacagcttttatacgagcattggctcgttaagccggtcgtcgaccatctgcggctt
tccttgaaccggcgcaatttcgatgcgatggaaagcattctgccctctctctacctgaat
cgcgagaagggaatggcgatcattcgcgcgaaggaagcgataaggcccaagaaagggccg
ctcgtgcatttgttatcgctgccggaactgaaggattaccagaaggacaagatcacggac
cgtctggcactgatcaagtcattcgtaaccatgaagccggcgcaggccattatacacatt
cgaaaaaccttctatgacgcttattcggaagctagtgaacggcataaattaacgctgcat
aaggagatgctgaaggagctgctggacgagctggaagcttccgccgcgcgcttcgatacg
gtcgaggctttcatagcgttcatcgatgacgtagtggccaagaacagcgataatacccgc
cagaagctgcaggagcagggcaatcgcattgcattgatgacgatccatcgttccaaagga
ttggaattccccgtcgtctgcttgatcggggcttccgatggcagcttgccgcacagctcg
gctctggataccgaccggatgaaggatgtcttcacgaggacgggcagcaggccaatcagc
tcggtcgcattggaagaggagcggcgtcttgcttatgtggccgttacccgtgcccgggag
gagttgttcattagctccccttctcaatacagaggcaagaaagccgctatttcgcaattc
gttctggctgccttccaacaagcagcgggtccctcagcttcgcctaagtcggtccatacg
aagacgggccggcatatttccagccccggttccaagcctgcaggagagaccgaaaccgtt
ctggcatgggtttgcaccagcccgccatgcatcgcttggaccagaatagacccgtataaa
gaagcgcatctgacatccaagccctgtccgctctgcaagtcggccatggagaagggcagc
aaggccgtcccggtgtag
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