Paenibacillus spongiae: L1F29_02585
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Entry
L1F29_02585 CDS
T09530
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
pspn
Paenibacillus spongiae
Brite
KEGG Orthology (KO) [BR:
pspn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pspn03016
]
L1F29_02585 (thpR)
Enzymes [BR:
pspn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
L1F29_02585 (thpR)
Transfer RNA biogenesis [BR:
pspn03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
L1F29_02585 (thpR)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
UVI30785
LinkDB
All DBs
Position
complement(586094..586714)
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AA seq
206 aa
AA seq
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MSILSITSDATQRLFVAVPLSAEFKAAVSVWCDTKVRELPFKKWAHPDDLHITLHFLGDT
PGERIAAIEQAVRHAACSTEPFSLAIESPGTFGRPDKPSVLWAGIGGELDALHQLNKRIL
SRLAPLGYEPENRPYHPHLTLARDYRSPVPFEPSMLESCRIPLTEDGAPLRWAVNDIVLY
RSRLQRQPLYEVVSRFPLDCDADDIT
NT seq
621 nt
NT seq
+upstream
nt +downstream
nt
gtgtctattctgtctataacgtccgatgcaacccaacgtctgtttgtcgccgttccattg
tcagccgaattcaaagccgccgtgtctgtatggtgcgacactaaagtacgggagctgccg
ttcaagaaatgggctcatcccgacgatcttcatattacgctgcattttctgggcgacacc
ccaggcgagcgtatcgcggcaatcgagcaggcggttcgacatgctgcatgctcaacggag
cctttttcgcttgccatagaatcacccggcactttcggacgccctgacaagccctccgtc
ctatgggccggaatcggcggcgagcttgatgcgctgcatcaactgaacaagcggatctta
agcagacttgctccactcggatacgagccagagaaccgcccctaccatccccatctgacg
ctggcccgcgattacaggagtcctgttcctttcgagccatccatgctggaaagctgcaga
ataccccttacggaagacggcgctccgctccgctgggccgttaacgatatcgtgctgtac
cggagccgactgcagcgtcagccattatatgaagttgtatcccgctttcctcttgattgc
gatgctgatgatatcacttaa
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