Paenibacillus spongiae: L1F29_04675
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Entry
L1F29_04675 CDS
T09530
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pspn
Paenibacillus spongiae
Pathway
pspn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pspn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
L1F29_04675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspn03400
]
L1F29_04675
Enzymes [BR:
pspn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
L1F29_04675
DNA repair and recombination proteins [BR:
pspn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
L1F29_04675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UVI31145
LinkDB
All DBs
Position
complement(1079421..1080359)
Genome browser
AA seq
312 aa
AA seq
DB search
MKLEPIIPFEPVAASEFPKGDQWTAQIKWDGVRILSYFDGERTKLFNRRLNERTLQYPEL
LQAESYCSADSFILDGEVIAFENGSPSFHEVMKRDSLRSAQRIQEQKGTVPITYMIFDLI
YLNGVWVKDKKLRDRQTLLSSIIRPNVQVQVVPSYSDIAGLYRVAEQHRLEGIVIKDLNS
TYSIDGKDKRWMKKKNVQDLIAVVGGVTLRDGIVNALLLGLYDDAGRFWYIGHAGSGKLT
MNDWRTLTQLITTMTVRSMPFANKPERYKDAIWIEPRLTVKINYMEWTSNKTLRQPTIQA
FLDVPPQECTFS
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgaagctggaacctatcattccttttgaacctgttgctgcaagtgaatttcccaaggga
gatcaatggacggcccaaattaaatgggatggcgtccgaatattaagttattttgacggc
gaacgtacgaagctatttaaccgaaggctgaatgaacgaacattgcagtatcccgaattg
ctgcaggccgagtcctattgcagcgcagactctttcattcttgacggtgaagtgatcgct
ttcgagaatggcagcccttcctttcatgaggtcatgaaacgggacagcttaagaagcgcg
cagcggattcaagagcagaaaggtactgttcccattacatacatgatctttgatttgatt
tatcttaacggcgtatgggttaaggacaagaagcttcgggaccgccaaacgctgctgagc
agcattattcgtccgaatgtgcaggtgcaggtcgttccaagctatagcgacattgccggt
ctataccgggttgcagagcagcataggcttgaaggcattgtgatcaaggatctgaacagc
acctattccatcgacggcaaagacaagcgctggatgaagaaaaaaaatgttcaggatcta
atcgcggttgtcggcggcgtaaccttacgggatggcattgttaatgcgttgctattgggc
ctgtatgatgacgcaggacgcttctggtacatcgggcatgccggttcaggaaaattaacg
atgaatgactggcggacattgacgcagctgataacgacaatgacggttcgttccatgcct
ttcgcaaacaagccggaacgttacaaagacgctatatggatagaaccgcggctgacggtc
aaaataaactatatggaatggacttccaataaaacgctgcgacagccgacgattcaagct
ttcttggatgttcccccacaagaatgcacgtttagttaa
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