Paenibacillus spongiae: L1F29_08760
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Entry
L1F29_08760 CDS
T09530
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pspn
Paenibacillus spongiae
Pathway
pspn03030
DNA replication
pspn03430
Mismatch repair
pspn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pspn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L1F29_08760
03430 Mismatch repair
L1F29_08760
03440 Homologous recombination
L1F29_08760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pspn03032
]
L1F29_08760
03400 DNA repair and recombination proteins [BR:
pspn03400
]
L1F29_08760
Enzymes [BR:
pspn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
L1F29_08760
DNA replication proteins [BR:
pspn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
L1F29_08760
DNA repair and recombination proteins [BR:
pspn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
L1F29_08760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
DUF6282
Motif
Other DBs
NCBI-ProteinID:
UVI31888
LinkDB
All DBs
Position
1920722..1924420
Genome browser
AA seq
1232 aa
AA seq
DB search
MDDMGGGQDFVHLHVHSEYSLLDGAARIRNLVARAAELGMKALALTDHGVMYGAVPFYKE
CRKHGIKPIIGCELYLTAGSRFEKGSRKENPTYHLILLAKNETGYRNLMKLCSIGHLEGF
HYKPRIDMEVLAAYSEGLVCLSSCLRGEVSWHLLHDRTGEAREAALRYRNIFGEDFYLEL
QDHGLLDQKKVVQAMIALAQETGIPLTVTNDVHYIEASDAAVQDVLISIGTGKTVEDEDR
MRILTDQLYLKSADEMAKQFRQAPEAVARTVEIAAKCELELTFGRALLPSFGPIPSGMTS
AAYLSTLCREGLEARYAGKPEWTEDPAYRERAEQRLLYELSVIDSMGFNDYFLIVWDFIR
FAHDQGIRTGPGRGSSAGSLVAYTLRITDVDPLKYKLLFERFLNPERISMPDIDIDFNDE
RRDEVITYVSAKYGEEHVAQIITFGTMAARAAVRDVGRAMAVPFAEVDRAAKLIPGQLGM
TLEEALRVSTELREAYERQPKTRAMLDMALKVEGMPRHASTHAAGVVISGKPLTHVVPLQ
AGTEQTALTQYSMEHLEAVGLLKMDFLGLRTLSILERALEWVKRQHGITVDFRFIPDDDP
LTYAMLSHGDTTGIFQMESAGMRRVLRELKPTKFEDIVSVVALYRPGPMEFIPKFIQGKH
GVVEVEYPHPSLEPILADTYGIIVYQEQIMQIASSMAGFSLGEADLLRRAVSKKKREVLD
EQRAHFVQGSLGQGYSEEDANRVYDMIVRFADYGFPRAHAAAYGVLSFQTAWLKANHPVP
FMASMLASVTGNQHKTAEYVDECRRMGIDVLPPDVNESDISFTPAEGAIRFGLAAIKNVG
SQAIESIKKERAERPFDSLLDLCRRVDLRVVNKRVLESLVQAGACDTLPGHRAQLFAALD
ETVDAASRWRKEREELQLEMFGFDEVQNWDVELPEVQPFTTGQLLELERELLGLYLSGHP
LDDYEPALEELPLDRLVDLAEAPEGGKALIAGMVVSAKRFTTKKGQAMAFLELEDRIMRL
EAVAFPAVWSRHAALLEPGSLAVVLATVQHQDEDFKLLLDDVVPLGRPDLNLAEQVRRLQ
RQAQARGASRGGGAQAPTAQAGARRSGSAQPAQASAPAAAASAPKPPQGGAAEPAGKPHQ
QRAAQAAPAAAVRRQQHQQRLYIKVAAGREEAAALERLKTLLSGNNGPLETVLFYEARQK
TVALSEAYRVKPSEQLITDIESLFGKGSAIVK
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atggatgacatgggcggcggacaagatttcgtgcacttgcacgttcatagcgaatacagc
ttgttagatggcgctgcacgcatccggaatcttgtcgcccgggcggcagagcttggaatg
aaggcgctggcactgaccgatcacggggtcatgtacggcgccgttccgttttataaagaa
tgcaggaagcacggcatcaagccgatcatcggctgcgagctgtatttgaccgcaggctcg
cggtttgagaaaggttcgcggaaggaaaatccgacttatcatctgattctgctggccaag
aatgagaccggctatcggaatttaatgaagctgtgctccatcggccatctggaaggcttt
cattacaagccgcgcatcgatatggaggtgctggccgcctattccgaagggcttgtttgt
ttaagctcttgcctgagaggcgaggtttcctggcatctgctgcatgaccggaccggggag
gcgcgcgaagcggcgctccgttaccggaatattttcggcgaggacttctatctggagctt
caagaccacgggctgctcgatcagaagaaagtggtgcaggccatgatcgcgcttgcgcag
gagacgggcattccgcttacggtgacgaatgacgtccattatatcgaagcttcggacgcg
gcggttcaggatgtgctcatcagcatcggaaccggcaagacggtcgaggatgaagaccgg
atgcggattctaaccgaccagctctatctgaagagcgcagacgagatggcgaagcagttc
cggcaagcgcccgaggcggtggcgaggacggtcgaaatcgcagccaaatgcgagctcgag
ctgaccttcggacgtgcgctgctgccatccttcgggcctattccgtccgggatgacaagc
gccgcgtatttgtcgacgctgtgccgggaagggctcgaggcccgttatgcaggcaaaccg
gaatggacggaagatccggcataccgggagcgggccgagcagcggctgctctacgagctt
tccgttatcgacagcatgggcttcaacgattacttcctgatcgtatgggatttcatccgg
tttgcccacgaccagggaatccgcaccggtcccggacggggctcgtcggcaggcagtctg
gtcgcttacacgctccgaattacggatgtcgacccgctcaagtacaagctgctcttcgaa
cggttcctgaatccggaacgcatctcgatgccggacatcgacatcgatttcaacgatgaa
cggcgggacgaggtcattacttatgtatcggcaaaatatggcgaggagcatgtcgcgcag
atcatcaccttcgggacgatggcggcgcgcgcggcggtccgtgacgtcggccgggcgatg
gccgttccgttcgcggaggttgaccgggcagccaagctgattcccggccagctcggcatg
acgctggaggaagccctccgcgtcagcaccgagctgcgcgaggcgtatgagcggcagccg
aagaccagggcgatgctcgatatggcgttgaaggtggagggcatgccgcgccatgcctct
acgcatgccgcaggcgtcgtgatctccggcaagccgctgacgcatgtcgttccgcttcag
gccggcacggagcagacggcgctaacgcaatattcgatggagcacctggaagccgttggc
ttgctgaagatggactttctcggcctacggacgctctcgattctggaacgggcgcttgaa
tgggtaaagcggcagcatgggatcacagtcgattttcggtttattcccgacgatgacccg
ctgacgtatgccatgctgagccatggggatacgactggtattttccagatggagtccgct
ggtatgcgacgggtgctgcgggagctgaagccaacgaagttcgaagacatcgtatccgtc
gtcgcattataccggccaggcccgatggagttcattccgaagttcatccagggcaagcac
ggggtcgtggaggtcgagtatccgcatccgtcactcgagccgattcttgccgatacgtac
ggcatcatcgtctatcaggagcagattatgcagatcgcctcgtcgatggcgggcttctcg
ctcggagaagcggatttgctccggcgtgccgtatcaaagaagaagcgcgaggtgcttgac
gagcagcgggcacattttgtgcagggcagtctggggcaggggtattcggaggaagacgcg
aaccgggtctacgatatgatcgtcaggttcgccgactatggttttccccgcgcgcatgcg
gccgcttacggcgtgctttcctttcagacggcttggctgaaggcgaatcatccggtgccg
ttcatggcttcgatgctcgcatcggtgacagggaaccagcacaagacggccgaatatgtc
gacgaatgccgaagaatgggcattgacgtgctgcctcccgacgtgaacgagagcgatatc
tcgttcacgccggcggaaggcgcgattaggttcggcttggcggcgatcaagaatgtcgga
agccaggcaatcgagtcgatcaagaaagaaagagcggagcgtccattcgacagtttgctc
gatctgtgcagacgcgtcgatctgcgcgtagtgaacaagcgggtgctggaatcgcttgtt
caagcaggcgcttgcgatacgctcccgggacaccgggcgcagctcttcgcggcgctggac
gagacggtggatgccgcgtccaggtggcgcaaggaacgggaagagctgcagctggagatg
ttcggcttcgacgaagttcagaactgggatgtcgagctgccggaagtgcagccattcacg
accggtcagctgcttgagctggaacgcgagctgctcgggctctatctgtccggccatccg
ctggatgattacgagcccgccttggaagagctgccgctggacaggctggtcgatttggct
gaagcgccggaaggcgggaaggcgcttatcgccgggatggtcgtatcggcgaagcgcttt
acgacgaagaaggggcaggcgatggcgttcctggagctggaggaccggatcatgcgcctg
gaagcagtcgccttcccggcggtctggtcgcgccatgcggcgcttctggagcccggaagc
ctcgccgtcgtgctggcgacggtccagcatcaggacgaagacttcaagctgctgcttgat
gacgtcgtcccgctcggccgcccggacctgaacctggcggagcaggtccggcggctgcag
cggcaggcgcaagcgcggggagcgtcccgcggcggcggcgcgcaagcgcccacggcgcag
gccggcgcccgcagaagcggcagcgcgcagcctgcccaggcttcggcgccagccgcggct
gcgtccgcgccgaagccgcctcaaggcggcgcggcggagcctgcgggcaagccgcatcag
cagcgggccgcccaggctgcgcccgctgcggcggtcaggcggcagcagcatcagcagcgg
ctgtatatcaaggttgccgcaggccgggaagaagcggcggcgctcgagcggctcaagacg
ctgctgtccggtaataacggcccgcttgagacggtgctgttctatgaagcacggcagaag
acggtcgccctcagcgaggcttaccgcgtgaagccgtccgagcagctgatcacggacatc
gagtcgttattcggcaaaggctcggcaattgtgaaataa
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integrated database retrieval system
