Paenibacillus spongiae: L1F29_12255
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Entry
L1F29_12255 CDS
T09530
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
pspn
Paenibacillus spongiae
Brite
KEGG Orthology (KO) [BR:
pspn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pspn03016
]
L1F29_12255 (truB)
Enzymes [BR:
pspn01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
L1F29_12255 (truB)
Transfer RNA biogenesis [BR:
pspn03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
L1F29_12255 (truB)
Prokaryotic type
L1F29_12255 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
CTP_transf_3
Motif
Other DBs
NCBI-ProteinID:
UVI32545
LinkDB
All DBs
Position
2638056..2638973
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AA seq
305 aa
AA seq
DB search
MDGILAVWKPAGWTSHDVVAKVRRIVRVKRIGHTGTLDPQVTGVLPLCIGRSTRVVEYVQ
ERPKAYEAVLQLGIATDTEDLTGTVVQELAEVHVTEAEIRRVLESFVGQIDQIPPMYSAV
RVDGKRLYELAREGQVIDRKSRKVTIHELNLLSADLDKPHPKIRFSVVCSKGTYIRTLCV
DIGEALGLPAAMAELVRTMSGGFKKEHCLTLEQIEELHASGELEERLLPAETAVDHFPRG
NVSLATAKHAFQGKHIAMDRVDMKQPIDAEGLVRLFAEDGMFLGLFEFDAKSDSLKPVKV
FTPTE
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atggacggtattttggcagtatggaagccggcgggctggacgtcgcatgacgtcgttgcc
aaagtaagaagaattgtacgggtcaagcgaatagggcataccggaaccttggatcctcag
gtgacgggtgtcctgccgctctgtatcggacgttcgacaagagtcgtcgaatacgttcaa
gaacgtcccaaggcatatgaagccgtgctgcagctgggcattgcgaccgacacggaggac
ttgaccggtaccgttgtgcaggaactggccgaggttcatgtcaccgaggccgagattcgc
cgggtgcttgagtcgttcgtcggtcaaatcgatcagatacccccgatgtattcggccgtt
cgcgtagacgggaagaggttgtacgaattagcccgcgaaggtcaggttatcgaccggaaa
tcgcgcaaggttacgattcatgagctgaatctgctgagcgcggacctggacaagccgcat
cctaaaatccggttttccgtcgtatgctccaagggcacctatatacgcacgctgtgcgtc
gatattggagaagcgctcggtctgcctgcagccatggcggagctggtgagaacgatgtcg
ggcggattcaagaaggagcattgcttgacgctggagcaaatcgaggagctgcatgcatcc
ggcgagctggaagagcgcctgctgcctgcagaaacggctgtagatcattttccaagggga
aatgtcagtctcgcaaccgcgaagcatgcgttccagggcaagcacatcgccatggatcgt
gtcgacatgaagcagccgatcgatgcggaaggcttggtccggttatttgcagaggacggc
atgtttctgggattgtttgaattcgacgcgaaatccgattcgttgaagccggtgaaggtg
tttacgcctaccgagtaa
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