Paenibacillus spongiae: L1F29_12375
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Entry
L1F29_12375 CDS
T09530
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
pspn
Paenibacillus spongiae
Brite
KEGG Orthology (KO) [BR:
pspn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pspn03009
]
L1F29_12375 (rimO)
Enzymes [BR:
pspn01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
L1F29_12375 (rimO)
Ribosome biogenesis [BR:
pspn03009
]
Prokaryotic type
ribosomal protein modification factors
L1F29_12375 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
TRAM
Motif
Other DBs
NCBI-ProteinID:
UVI32567
LinkDB
All DBs
Position
2664270..2665598
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AA seq
442 aa
AA seq
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MTERVKVVTLGCEKNMVDSEIMSGLIHERGYQLVEQADDATVIIVNTCGFIDAAKEESVN
TILDMAEYKQTGRLKALIVSGCLTQRYKQQLMDEMPEIDGIVGTGDFHHINTIVDEALNG
KKPMKVGNPAFDYDQKLPRLVTTPRYTAYVKIAEGCDNACTFCSIPIMRGKFRSRSIESI
VAEVELLASQGVREVSLIAQDSTNYGTDLYDAFMLPELLNRVSEVEGIAWVRLHYAYPGF
FTDELIETIAVNPKICKYIDMPLQHSEDIILKRMRRPGRQQDARELINKIRTRIPDVALR
TSIIVGFPGETEEDFNRLCDFVREIKFDRLGVFTYSSEEDTPAVRLPNHVPDDVKEWRSN
TLMEIQRDVSKYNSSKYIGREIDVLVERYDGRSDVYIGRSEYDAPEIDGEVFISNCQAGI
GEIQKVRVTHAYEFDMSGEGLS
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacgagttaaagtggtaacactaggctgcgagaagaacatggttgattccgag
atcatgtctggactcatccatgaacgcggatatcagcttgtcgagcaggctgacgatgcg
actgtcattatagtgaacacatgcgggtttatcgatgcggccaaggaagaatcggtgaac
accattctcgatatggcggagtataagcagaccggacgtctgaaggcgcttatcgtatcc
ggctgtctaacgcagcgttacaagcagcagctgatggacgaaatgcccgaaatcgacgga
attgtcggtaccggcgattttcatcacatcaatacgattgtcgacgaagcgctgaacggc
aagaagccgatgaaggtcggcaatcctgctttcgactatgatcagaagcttccaaggctc
gtaacaaccccgcgatatacggcttatgtcaagatagcggaaggctgcgacaatgcttgc
acattttgttcgatcccgattatgcgcggtaagttccgcagccgctcgattgagtccatc
gtggcagaagttgagctgctagcatcgcaaggcgtgagggaagtcagcttgatcgcacag
gattcgacgaattacggaacggatctgtacgatgcattcatgctgcccgagctccttaac
cgggtgagcgaggtcgaaggaatcgcatgggttcggctgcattatgcgtacccaggcttc
ttcacggatgaattgatcgagacgatagcggttaatccgaagatctgcaaatatatcgat
atgccgcttcagcacagcgaagatatcatactcaagcggatgcgccgcccgggacggcag
caagatgcccgcgagctcattaacaagattcgaacccgtattccggatgtcgcgcttcgc
acatcgattattgtcggtttcccgggtgaaacggaagaagatttcaaccggctgtgcgat
tttgtccgggagatcaaatttgatcgtttaggtgtctttacatactcctcagaggaggat
acgccggctgtacggttgccgaatcacgtaccggacgacgtgaaggaatggcgttcgaac
acgctaatggaaatacagcgcgatgtatcgaaatataatagcagcaaatatataggacgc
gaaatcgacgtgcttgtcgagcgatatgacgggcgcagtgatgtctatatcgggcgttca
gaatatgatgccccggagattgatggcgaagtcttcatatcgaattgtcaagcgggaatc
ggtgaaattcagaaggtgcgggtaacgcacgcctatgaatttgatatgtccggggagggg
ctctcgtga
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