Paenibacillus spongiae: L1F29_12605
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Entry
L1F29_12605 CDS
T09530
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pspn
Paenibacillus spongiae
Pathway
pspn03420
Nucleotide excision repair
pspn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pspn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L1F29_12605
03430 Mismatch repair
L1F29_12605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspn03400
]
L1F29_12605
Enzymes [BR:
pspn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L1F29_12605
DNA repair and recombination proteins [BR:
pspn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L1F29_12605
MMR (mismatch excision repair)
Other MMR factors
L1F29_12605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD_C
UvrD-helicase
UvrD_C_2
AAA_19
SLFN-g3_helicase
AAA_16
Viral_helicase1
DEAD
PhoH
nSTAND3
AAA_30
NACHT
ResIII
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
UVI32609
LinkDB
All DBs
Position
2717467..2719548
Genome browser
AA seq
693 aa
AA seq
DB search
MTIQSAFQHEEKRLEDVLSHIRIQLRAIGPRYTGDDFTEQMIDLQTEQRRQRLEVSHREP
YFGRLDFQEDAKSEPTPLYIGKAGVAHEQTNDLLVIDWRAPVASLFYAFSGGEDPVTYES
PDGEIGGTIHLKRNLMVREGKLDRLVDSYVRGQEDESVTDEFLLYRLGESKDNKLRDIVS
TIQQEQDRIIRTDKNKAVFIQGVAGSGKTTVALHRLAYLLYQYADRISAERMVIFAPNRM
FLDYISGVLPELGVGDIKQTTYTEWAIEQLQKTVRIDDNADSLAYWFEQPRKREEMERSP
GRLKGSMLFKQAVDAKLEAVEATLLPQQPFEPIEGMVLTPDTVQSWMLTDESSEPLMRRR
TRLVSRLKRWFESEWKSRRMTDSKLKAKANARLNAFSKKIPSFTATQLYASLMDDESVAA
LLPAEDRTSTKKRMKQGTAAPEDLAPLVYIQLRLFGSDQPTYDHVVIDEAQDYSPFQLES
LRLCQRRPSMTVLGDLQQGIHGYAGIHSWIELTALFDLDDSGYFELDRSYRSTMEIIEFA
NQVLRGMGDGVKPATPVFRSGEPVEVVSCEEMERLRLVKDSIQAWTEDGAYRTIAILGRT
AKSCEAIWEHLTAAGLKASLVRSKQEAYGGGLTVVPVYLAKGLEFDAVLIADADAAYYGP
DDAKLLYVGCTRALHKLKLLHAGTLTSLIQPQD
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgacgattcaaagtgcctttcaacacgaggagaagcggcttgaagatgtattgtcgcat
atccgcattcaacttcgcgcaatcggtccgcgctataccggcgatgattttaccgagcaa
atgatcgatttgcagacggaacagcgcaggcagcgcctggaggtatcccatcgggagccg
tactttggccggcttgattttcaagaggatgcgaaatccgagccgacaccgctctatatc
ggcaaggccggtgtagcgcacgagcagacgaacgacctgctcgtcatcgattggcgtgcg
ccggttgcaagtcttttctatgcgttcagcggaggggaagatccggtaacttacgagtcg
cccgatggagaaatcggcggcaccattcatctgaaacggaacctgatggtgcgtgagggg
aagctcgaccgattggtcgacagctatgtccgggggcaggaggatgaatccgttaccgac
gaatttctgctctatcggctcggcgagagcaaggataacaagctgcgcgatatcgtatcg
accatccagcaggagcaggatcgcataatccgcaccgataagaataaggcggtattcatc
cagggcgttgccggaagcggcaaaacgaccgtcgcgctgcaccggctggcctatttgctg
tatcaatacgccgaccggatcagcgcggagcgaatggtcatttttgcgccgaaccggatg
ttcctcgattatatctcgggggtgctgccggaacttggcgttggcgatattaagcaaaca
acctacaccgaatgggcaatcgagcagctgcagaagacggtccgtatcgatgataacgcg
gattcgctagcctattggttcgaacagccgaggaagcgggaagagatggagcgctcgccc
ggacgtttgaaaggaagcatgctcttcaagcaggccgttgacgccaagctggaggctgtg
gaggcgacgctgctgccgcagcagccgttcgagccgatcgaaggcatggtattaacgccg
gatacggttcagagctggatgctcaccgacgagagcagcgaaccgttaatgcgccgccgc
acccgacttgtcagccgcttgaagcgctggttcgagtcggagtggaagagccggcggatg
accgacagcaagctgaaggccaaagcaaacgccaggctcaatgcctttagcaaaaaaatc
ccttctttcacagcaactcagctatatgcttcgctcatggacgacgaatcggtcgcggcg
ctgctgccggccgaggaccggacttcgacgaagaagcggatgaagcagggaacggctgca
cccgaggatttggcgccgctcgtatacatccagctccgtctattcggttcggatcaaccg
acctatgatcatgtcgtgattgacgaagcccaggattattcgccgttccagctggaatcg
ctgcgcttgtgccagcgccgaccgtcgatgaccgtgcttggcgatttgcagcaaggcata
cacggctacgccggcatacacagctggatcgagctgacggcgctgttcgatctggacgac
agcggatacttcgagctggaccgcagctatcgttcgaccatggagattatcgagttcgcg
aaccaggttctccggggaatgggagacggtgtgaagcctgcgactccggtattccgcagc
ggtgagccggtagaagtcgtttcttgcgaagaaatggaacgcctgcgtcttgtgaaggat
tccattcaagcctggaccgaagatggagcgtaccggacgattgcgattctcggacgtacg
gcaaaatcctgcgaagcgatctgggagcatctgacggccgcagggctgaaggcttccctc
gtccgcagcaagcaggaagcctacggcggcggactgacggttgttccggtctatttagcc
aaagggctcgagttcgatgccgtgctcattgccgatgccgatgcggcgtactatggaccc
gatgacgccaagcttctgtatgtcggatgcacccgtgccctgcataagcttaaactgctg
cacgcaggaacgctaacgtcgcttatccaaccgcaagattaa
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