Paenibacillus spongiae: L1F29_20550
Help
Entry
L1F29_20550 CDS
T09530
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
pspn
Paenibacillus spongiae
Pathway
pspn00300
Lysine biosynthesis
pspn00470
D-Amino acid metabolism
pspn01100
Metabolic pathways
pspn01110
Biosynthesis of secondary metabolites
pspn01120
Microbial metabolism in diverse environments
pspn01230
Biosynthesis of amino acids
Module
pspn_M00527
Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pspn00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
L1F29_20550 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
L1F29_20550 (dapF)
Enzymes [BR:
pspn01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
L1F29_20550 (dapF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DAP_epimerase
KH_PARP14_3
Motif
Other DBs
NCBI-ProteinID:
UVI27843
LinkDB
All DBs
Position
complement(4556511..4557341)
Genome browser
AA seq
276 aa
AA seq
DB search
MNFTKMHGLGNDFIVISGETTLPDHAAELAIELCNRYFGIGADGLVFILPSGKADFRMRI
INSDGSEAEQCGNAIRCVAKYVYDNGLTDKESITIETLGAGVQQVQINSIDGRAHTVRVD
MGEPILEGLKVPTTVDANPVLNHAIEVDGTEFRFTAVSMGNPHCVIYVDDAVNFDLNKWG
PKLETHPMFPRKINVEFVTVRSRDYADMRVWERGAGPTLACGTGACATVVASVLNGYTDR
KAVVALKGGELTIEWNEADNHIYMTGPAAEVFRGSL
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgaactttacaaaaatgcatggactaggtaacgatttcatagtaatatcgggagaaacc
acactgcccgatcatgcagcggagctggccatcgaattgtgcaatcggtacttcggcatt
ggcgcagacggcttagtcttcattttaccgtccgggaaagcggattttcgcatgcgaatc
attaattccgacggctccgaagcggagcagtgcggcaatgcaatccgctgtgtagccaaa
tatgtatacgataacggtctaaccgataaagaaagcatcacgatcgaaacgctgggagcc
ggtgtgcagcaggtgcagatcaacagcatcgacggccgggcgcatacggttcgcgtcgat
atgggagaaccgattctggaggggctgaaggtgccgacaacggtcgacgccaatcctgtc
ctgaatcatgccattgaggtcgacggaaccgaattccggtttacggccgtgtccatgggc
aacccgcactgcgtcatctatgtggacgatgcggtcaatttcgacctcaacaagtggggc
cccaagcttgaaacgcacccgatgtttccgcgtaaaatcaatgtggaattcgtcacggtc
cgttcgcgcgattatgccgatatgcgcgtttgggaacggggagcgggaccgacgctcgcc
tgcggcaccggagcgtgcgcaaccgttgtcgcttccgtgctgaacgggtacacggaccgg
aaggcggtcgtagccttgaagggcggcgagcttacgatcgagtggaatgaagcagacaat
cacatctatatgacaggcccggcggcagaagtattccgcggttcactgtaa
DBGET
integrated database retrieval system