Paenibacillus spongiae: L1F29_31110
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Entry
L1F29_31110 CDS
T09530
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pspn
Paenibacillus spongiae
Pathway
pspn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pspn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L1F29_31110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspn03021
]
L1F29_31110
03400 DNA repair and recombination proteins [BR:
pspn03400
]
L1F29_31110
Enzymes [BR:
pspn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L1F29_31110
Transcription machinery [BR:
pspn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L1F29_31110
DNA repair and recombination proteins [BR:
pspn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L1F29_31110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
UVI29789
LinkDB
All DBs
Position
complement(6946433..6947377)
Genome browser
AA seq
314 aa
AA seq
DB search
MIEIEKPKIETVELNEDGTYGRFVVEPLERGYGTTLGNSLRRILLSSLPGAAVTSVQIDG
VLHEFSTVPGVIEDVTEIILNLKSLSLKIHSDEEKVLEIDAEGDGNVTAGDIRADSDVEI
LSPDLHIATLASGARLHMRVFANRGRGYVQADRNKRDDQPIGVIPVDSIYTPITRVNYSV
ENTRVGQVTNYDKLTLEVWTDGSIRPEEAVSLGAKILTEHLDLFVGLTDEAKDAEIMVEK
EEDKKEKVLEMTIEELDLSVRSYNCLKRAGINTVQELITKTEEDMMKVRNLGRKSLEEVQ
EKLEELGLGLRMEE
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
gtgattgagatcgaaaagccgaaaatcgaaaccgtagagctgaacgaggatggcacttac
ggtcgtttcgtagtcgaaccgctggaacgcggatacggcacgacacttggaaattcgctt
cgccgaattctgttgtcgtcgctgccgggtgcagctgtcacctcggttcaaatcgacggt
gtgctgcacgagttttccacggttccgggagtgattgaggacgttaccgaaatcattctg
aacctgaaaagtctatcgctcaaaatccattccgacgaagagaaggtattggagattgat
gcggaaggcgatggtaacgtaacggcgggcgatattcgcgcggacagcgacgtcgaaata
ttgagccctgatcttcatatcgcgaccctggcctccggtgcgcggctccatatgcgggta
tttgcaaatcgcggccgcggttatgttcaagcggatcgtaacaagcgggatgatcaaccg
attggcgttataccggtcgattcgatctataccccgattacacgtgtgaactacagcgtc
gagaatacccgtgtcggtcaagtgaccaactacgacaaactaacgcttgaggtttggacc
gacggcagcattcgcccggaagaggcagtaagtctcggagccaaaattttgactgagcat
ctagacctgttcgtcggcttgaccgatgaagcgaaggatgccgaaattatggtggagaaa
gaagaagacaagaaagagaaagtactcgagatgacgatcgaggaactggatctttccgta
cgttcgtacaattgtctgaagcgtgcaggcatcaataccgtccaagagctgatcacgaaa
acggaagaagacatgatgaaagtccggaacctcggccgcaagtctttggaagaagttcaa
gagaagctggaggagctcggtcttggccttcgcatggaggagtaa
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