| Entry |
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| Symbol |
rpoC
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| Name |
(GenBank) DNA-directed RNA polymerase subunit beta'
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| KO |
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| Organism |
pspn Paenibacillus spongiae
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:pspn00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L1F29_31285 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:pspn03021]
L1F29_31285 (rpoC)
03400 DNA repair and recombination proteins [BR:pspn03400]
L1F29_31285 (rpoC)
Enzymes [BR:pspn01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L1F29_31285 (rpoC)
Transcription machinery [BR:pspn03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L1F29_31285 (rpoC)
DNA repair and recombination proteins [BR:pspn03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L1F29_31285 (rpoC)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
complement(6966905..6970522)
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| AA seq |
1205 aa
MLDVNNFEYMKIGLASPDKIRSWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGDTPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ
DIDVERELETLREELRTAQGQRRNRAIKRLEVIEAFRNSGNLPGWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMYQCGLPKE
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLASGNIL
NPKDGKPVVTPSQDMVLGSYYLTMDNKEAKGSGSVFANINEAISAYQRGIVSLHARVFIP
VKVLKKVTFTEEQQQSLLLTTVGKIIFNEIFPETFPYINEPSKANLLYGTPSKYFVTKKG
ADLQSFMQEIPIVGGVGKEYLGYIIAEVFRIYETTQTSITLDRIKQLGFTYSTRAGITIA
VSDVIVPQEKQEILKESEDKVKVVTNQYRRGLITNEERYDRVIDIWGQTKDKITDVLMKS
MDRYNSIMLMVDSKARGNKSQITQLGGMRGLMANPSGRIIELPIKSNFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTDKGFMVSKIQDGKEVIEDL
YDRIEGRYSFETIRHPESGEVIVHRSELIDSSRAEAIIEAGVEKLQIRSVLSCRARHGVC
KICYGRNLATGKHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQAIITELDGVIKDIREAKDRREIEVQGEAESKVYPVSYGSRIRVIKGQHIEA
GDELTDGSIDPKDMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHVEVMIKQMLRKIRI
VDAGDTTLLPGAFVDIHEYEAANREAILSGLEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMNRYRSIRLAGMEEELETMQEAET
VPVES |
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| NT seq |
3618 nt +upstreamnt +downstreamnt
ttgttggacgtgaacaacttcgagtacatgaagattggattagcatcgccagataaaatc
cgttcttggtcgcgcggtgaggttaagaaaccggaaacgatcaactacaggacgctaaag
cctgagaaggaaggattattctgcgaaaaaatcttcgggccgacgaaggactgggagtgc
cattgcggcaaatataaacgcgtacgttacaaaggcgtcgtttgcgaccgctgcggcgtg
gaagtaacacgggcgaaggttcgccgcgaacggatggggcatatcgagcttgccgcgcca
gtatcgcatatctggtatttcaaaggaattccaagccggatggggctagcactcgatatg
tcgccccgttcgctggaagagattatctattttgcatcttatgtcgtaacggatccaggg
gatacgccgctcgagaagaagcagctattgtccgagaaggaataccgcagctaccgcgag
aagtacggctacggtttccaagcggggatgggtgcggaagccgtcaagaagcttctgcag
gacatcgacgtcgagcgtgagctcgaaacgcttagagaagagctgagaaccgctcaagga
cagcgtcgtaaccgtgctatcaagcgtttggaagttatcgaagcgttccgtaattccggc
aacctgccgggctggatgattctggatgtcctgccggttattccgccggagcttcgtccg
atggtccagctggacggcggacgctttgcaacctccgacttgaacgatctgtatcgtcgg
gtcattaaccggaacaatcgtctgaagcgtctgctcgatctgggcgctccagacattatc
gtgcagaacgagaagcggatgctgcaagaggccgtcgatgctctgatcgacaacggccgc
cgcggccgtccggtaacgggcccgggcaaccgtccgctcaaatcgcttagccatatgctg
aaagggaagcaaggtcgcttccgtcagaacctgttgggtaaacgggttgactactccggc
cgttccgttatcgtcgtcggtccgagcctcaagatgtatcagtgcgggctgccgaaagaa
atggcgctcgagctgttcaaacctttcgtcatgaaagagctcgtcaacaagggcttggct
cataacatcaagagcgcgaagcgcaaggtcgagcgcgttagccctgaagtatgggatgtc
ctcgaagaagtcatcaaagagcatccggtactgctaaaccgcgcccctacgcttcaccgt
ctcggtattcaagcgtttgaaccgattctggttgaagggcgcgctatcaagcttcatccg
cttgtttgtaccgcgtacaacgcggatttcgacggcgaccagatggctgttcacgttccg
ctgtcggctgaagcgcaagcagaagcgcgtctgctgatgctcgcttccgggaacatcttg
aacccgaaagacggcaagccggtcgttacgccttctcaggatatggttctgggaagctac
tatttgacgatggataacaaagaagcgaagggcagcggctccgtattcgcaaatataaac
gaagcgatttctgcttaccaacgcggaattgtatccctgcatgctcgcgtatttattccg
gtcaaagtgctgaagaaagtcacctttaccgaggagcagcagcaatcgttactgttgacg
acagtcggcaaaatcattttcaatgaaattttcccggaaacgttcccttatatcaatgag
ccgagcaaagccaatctgctctatggaacgccgtccaaatacttcgtcacgaaaaagggt
gcggatctgcaaagctttatgcaggaaatccctattgttggcggtgtcggtaaggaatac
ctgggctatattattgcagaggttttccgtatctacgaaacgactcaaacgtcgattacg
ctcgaccgcatcaagcagctcggatttacgtactcgacacgtgcaggcattacgattgcc
gtctcggacgttatcgtaccgcaggagaagcaggaaattcttaaagagtctgaagacaaa
gtcaaggtggtcaccaaccaatatcgtcgtggtcttatcaccaacgaagaacggtatgac
cgcgtcattgatatttggggccagacgaaagataaaattaccgatgtcctcatgaaatcg
atggatcgctataactccatcatgctcatggtggattccaaggcgcggggtaacaaatcg
cagattacacagcttggcggtatgcgggggctgatggccaacccgtccggacgtattatc
gagttgccgatcaaatcgaacttccgtgaaggactaaccgttctcgagtacttcatctcg
acgcacggtgcccgtaaaggtcttgccgatacggcgctgcgtacagcggattccggttac
ctgacacggcgtctggtagacgtagctcaagacgtgatcgttcgtgaggacgattgcggt
acggataaaggcttcatggtcagcaaaatccaagatggcaaagaggttatcgaggatctg
tatgaccgtatcgaaggccgctactcgttcgagacgatccgtcatccggaatcgggcgaa
gttatcgttcaccgcagcgagttgatcgattcgagcagggcggaagcgatcatcgaagcc
ggagtggagaagctacaaatccgttccgtactgagctgccgcgcgagacatggcgtatgt
aaaatttgttacggacgtaaccttgctaccggcaagcatgttgagatcggggaagctgtc
ggcattattgccgctcaatcgatcggtgagccgggaacacagcttacgatgcgtacattc
cataccggcggtgtcgccggagacgatattacgcaaggtttgccgcgtattcaagagctc
ttcgaagcgcgtaatccgaaaggtcaagcgatcattaccgagcttgacggcgtaattaaa
gatattcgcgaggcgaaagaccgccgcgaaattgaagttcaaggcgaagcggagagcaag
gtgtatccggttagctacggctccagaattcgcgtcattaaaggtcaacatattgaagca
ggcgatgagcttaccgacggatcgatcgatccgaaggatatgctgcgcatcaaagggatc
cgtggcgttcagaactatattctgcaagaagttcaacgcgtttaccggaaccagggcgtt
gaaattaacgataagcacgttgaagtcatgatcaagcaaatgcttcgtaaaatccgcatc
gtggacgcgggagatacgactctgctccctggagcattcgtggatattcatgaatacgag
gcagctaaccgtgaagcgatcctgtcaggtcttgagcctgctgttgccaaaccggtattg
ctggggattacgaaagcgtcgctggaaacagactccttcttgtcggcagcttctttccaa
gagacgactcgcgtccttacggatgcagcgatcaaagggaaagtggaccaattgctcggc
ctgaaagagaatgttattatcggcaagctcatcccggcaggaacagggatgaaccgttac
cgcagtattcgtctagctggcatggaagaagagttggaaactatgcaggaagctgagacg
gtaccggtagaatcataa |
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