Paenibacillus spongiae: L1F29_31290
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Entry
L1F29_31290 CDS
T09530
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pspn
Paenibacillus spongiae
Pathway
pspn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pspn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L1F29_31290 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspn03021
]
L1F29_31290 (rpoB)
03400 DNA repair and recombination proteins [BR:
pspn03400
]
L1F29_31290 (rpoB)
Enzymes [BR:
pspn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L1F29_31290 (rpoB)
Transcription machinery [BR:
pspn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L1F29_31290 (rpoB)
DNA repair and recombination proteins [BR:
pspn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L1F29_31290 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
UVI29824
LinkDB
All DBs
Position
complement(6970607..6974170)
Genome browser
AA seq
1187 aa
AA seq
DB search
MRGEVKLAGQLVQYGRRTRRSYARIEEVLEVPNLIEIQQKSYEKFLEKDLLELFQDISPI
QDFTGNLMLEFIDYSLGEPKYSVDDSKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGD
FPLMTETGTFIINGAERVIVSQLVRSPSVYFSTKVDKNGKKNYTATVIPNRGAWLELETD
AKDIIYVRIDRTRKIPVTVLLRALGFGTDAEILDLLGHDEYIRNTLDKDNTDSTEKALIE
IYERLRPGEPPTLDNAKSLLVARFFDPKRYDLANVGRYKINKKLHIKNRLFNQKLAETLV
DPATGEIIAEAGQMIDRRLLDEILPHLEKNVGFKTYHVANGVLDADSIPLQAISVFSPTE
DGKVIKVIANGVIDKGVKHITPADIISSINYFIDLLHGVGSTDDIDHLGNRRLRSVGELL
QNQFRIGLSRMERVVRERMSIQDANAITPQALINIRPVIASIKEFFGSSQLSQFMDQTNP
LAELTHKRRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTFAR
INEYGFIEAPYRWVDPKTGIVSEQIAYLTADEEDNYVIAQANVELTEEGKFAEDAVIVRY
NKQADNILTMPSDRVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLIP
KAPLVGTGMEHKSAKDSGVCIVAKYDGVIERVSANEIWLRRIEIIDGKPVTGDLIKQKLH
KFMRSNQGTCINQRPLCRKGDVVKKGDILADGPSTEMGELALGRNVVVAFMTWEGYNYED
AILLSEKLVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALRNLDERGIIRVG
AEIGAGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGTDGIVVDVKVF
TRENGDELPPGVNQLVRAYIAQKRKISEGDKMAGRHGNKGVIARILPEEDMPFLPDGTPV
EVVLNPLGVPSRMNIGQVLEVHLGMACKHLGIHSSTPVFDGAREYDVFDTMEEAGMQRNG
KTVLYDGRTGEEFEREVTVGVMYMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQ
RFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENVPEPGVPESFKVLIK
ELQSLGMDVKILTENEEEIEMKEMDDEDDGQSDKLNLNLEGSEVGVE
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgaggggtgaggttaagttggcaggacaacttgttcagtatggtcggcgcacgcgcagg
agctatgctcgtatcgaggaggtgctcgaagttccgaacctgattgaaatccaacaaaaa
tcgtatgagaagtttttggagaaggatttgcttgagcttttccaggacatctcgccgatt
caggattttacaggtaatttgatgctcgagtttatcgactactcgcttggcgagccgaaa
tattcggttgatgattcgaaagagcgtgacgtaacttatgcggcaccgctgcgggttaag
gttcggcttatcaacaaagaaaccggcgaagtgaaagagcaagaagtgttcatgggcgat
tttccgctgatgaccgagaccggcacctttattattaatggtgcggaacgggttattgtc
agccaattggttcgctcacctagcgtgtacttcagtacgaaagtggataagaacggcaag
aaaaattacacggctacggtcattccgaaccgcggcgcatggttggagcttgaaaccgat
gcgaaggacattatctatgtccgtattgaccgcacgcggaagatacctgtaacggttctg
cttcgcgcactcggttttggcaccgatgcggagattctggacctgcttggccacgatgaa
tatatccgcaacacgttagataaggacaacaccgattcgacggagaaggcgttgattgag
atctacgaacggctgcgtccgggcgagccgccgacgttagataacgcgaagagcttgctg
gttgcccgtttcttcgatccaaaacgttatgacctggcgaatgtcggtcgatataaaata
aacaaaaagcttcacattaagaacagattgttcaatcagaaattggcggaaacgcttgtt
gatccggcaaccggggaaattattgccgaagctgggcaaatgatcgaccgccgcctgttg
gatgaaattttgccgcatcttgagaagaatgtcggtttcaagacgtatcacgttgcgaac
ggcgttcttgatgccgatagtattccacttcaggcaatcagtgtattctcgccgacagaa
gatggaaaagtaatcaaggtgattgcgaacggcgtgattgataaaggcgtgaagcatatt
acgccggctgacatcatttcgtcgatcaattacttcatcgacttgctgcatggtgtcgga
agcacggacgacatcgaccacttgggcaaccgccgtctgcgttccgtaggcgagctgctg
cagaatcagttccgcatcggtttgtcccgtatggagcgcgtcgtgcgcgagcggatgtcg
attcaggatgcgaatgccattacaccgcaggcgttgatcaacattcgtccggttatcgca
tcgattaaagagttcttcggttcctcgcagctctcgcagtttatggaccaaacgaatccg
ttggctgaattgacgcataaacgccgtttatccgctctcggacccggcggtttgacgcgg
gagcgcgcaggcttcgaagttcgtgacgttcaccactctcactatggccgtatgtgtccg
attgagacgccggagggtccgaacattggtctgatcaactcgttgtcgacctttgcgcga
attaacgaatatggcttcatcgaagcgccatatcgttgggttgatccgaagaccggaatc
gtaagtgagcagattgcttatctgacggcagatgaagaggataactacgttattgcgcaa
gcgaacgtggaactgaccgaggaaggcaaatttgccgaggatgccgtaatcgtccgttac
aacaaacaggcggataacatcctgaccatgcctagcgaccgcgtcgactatatggacgta
tcgccgaagcaggtcgtatcggttgcgacggcgctcattccgttcctcgagaacgatgac
tccaaccgcgcgctgatgggatcgaacatgcagcggcaggcggttcctcttcttataccg
aaggctccgcttgtcggcaccgggatggagcataagtcagcgaaagattctggcgtatgt
atcgtcgctaaatatgatggtgtgattgaacgcgtatccgctaatgaaatttggctgcgt
cgtatagagattatagacggaaagccggttaccggcgatctgatcaagcaaaagcttcat
aagtttatgcgttccaaccaaggtacgtgcatcaaccaacggccgctttgccgtaaaggg
gatgtagtcaagaagggcgatattctcgcggacggtccttccaccgagatgggcgaatta
gcccttggccgcaacgtcgtcgttgcgttcatgacgtgggaaggctacaactacgaggat
gctattctgctaagcgagaagctcgtcaaagaagatgtgtacacttccattcacatcgag
gaatacgagtccgaagcccgggatacgaagctcggtcccgaagaaattacacgcgatatc
ccgaacgtcggggaagaagcgctccgcaatctagacgagcgcggcattatccgcgtaggc
gctgaaattggcgccggagatattctggtcggtaaagtaacgcctaagggcgtgacggag
ctgacggctgaagaacgcttgctgcacgccatcttcggcgagaaagcgcgcgaagtacgg
gatacctcgttgcgggtgcctcacggtacggatggcatcgtcgtggatgtgaaggtgttc
acacgcgagaacggcgatgaattgcctcctggcgttaaccagctcgtacgtgcttacatt
gctcagaaacgtaagatttccgaaggcgacaaaatggcgggacgtcacggtaacaaaggg
gttatcgccagaattttgccggaagaggatatgccgttcctgccggatggcacgcctgtt
gaagttgtcctaaacccattgggcgtaccgtcgcgtatgaacatcggtcaggttctcgag
gttcacttgggtatggcgtgtaagcatctgggtatccactcatcaacgcctgtattcgac
ggcgctcgtgagtacgacgtatttgatacgatggaagaagccggtatgcagcgtaacggt
aagaccgtcctgtacgacggccggaccggtgaagagtttgagcgcgaagttaccgtaggc
gtcatgtacatgatcaaactggcgcatatggtcgacgacaaaatccatgcccgttccaca
ggtccttactcgcttgttacccagcagccgctgggcggtaaagcgcagttcggcggacag
cgcttcggggagatggaagtttgggctctggaggcatatggcgcagcctatacgctccaa
gaaattcttaccgttaaatccgatgacgtcgtcggccgcgtgaagacgtacgagtcgatc
gtcaagggcgagaacgtgccggagccgggcgttcctgagtcgttcaaggttttgatcaag
gagcttcagagcttgggtatggacgtcaagatcctgaccgagaacgaggaagagatcgaa
atgaaggaaatggacgacgaagacgatggtcagagcgataagctgaatctgaaccttgaa
ggatcagaggttggcgtcgagtaa
DBGET
integrated database retrieval system
