Pseudoalteromonas spongiae: PSPO_a0042
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Entry
PSPO_a0042 CDS
T05098
Symbol
uvrD
Name
(GenBank) DNA helicase II / ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pspo
Pseudoalteromonas spongiae
Pathway
pspo03420
Nucleotide excision repair
pspo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pspo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSPO_a0042 (uvrD)
03430 Mismatch repair
PSPO_a0042 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspo03400
]
PSPO_a0042 (uvrD)
Enzymes [BR:
pspo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSPO_a0042 (uvrD)
DNA repair and recombination proteins [BR:
pspo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSPO_a0042 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
PSPO_a0042 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_12
DUF5906
DEAD
Motif
Other DBs
NCBI-ProteinID:
ATC97309
LinkDB
All DBs
Position
I:complement(45161..47332)
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AA seq
723 aa
AA seq
DB search
MDVSELLDGLNDNQREAVAAPLQNMLVLAGAGSGKTRVLVHRIAWLMQVEHASPYSIFAV
TFTNKAAKEMRSRVEATLKASVGGMWIGTFHGLSHRILRAHHKEANLPESFQILDTDDQV
RMIRRLMKAMNIDEKKWPAKQAAWYIGAKKDEGLRPKYIQAFDPNEQMMLRIYTAYQEAC
DRAGLVDFAEILLRCFELLRDQPTLLRHYQQRFPHMLVDEFQDTNTIQYQWLKLIAGKSN
KIMIVGDDDQSIYGWRGARIENIKQFISDFDAQTIRLEQNYRSTGNILKAANHLIANNSE
RMGKELWTDGNQGEQIGVYAAYNELDEARFIVSKIKAWFEQGNALQDCAILYRNNAQSRV
LESELNIQSPRIPYRIYGGMRFFERQEIKDALCYLRIVNNRNDDAAFERIINTPTRGIGD
RTLSQIRDCARSESLPLWYAAKTLLAEKHLAGRAANAVNSFIELIDQIEDNILDKSLDKQ
TKYAIQTSGLMAMYMAEKGEKGQARVENLEELINATSQYELPDEEEFSSPLDGFLAYTAL
ESGEGQADEHEDAVQMMTLHSAKGLEFPLVFMAGVEEGMFPSQQSQEETGRLEEERRLCY
VGMTRAMQKLYICHAESRRLYGQEKFHSPSRFIRELPEDCLDEIRIKTQITKPKTTGRFS
NTISLETFNDTGFKLGQRVMHGKFGEGTVLNYEGTGPQARIQVNFDDHGTKWLVTMYAKL
QAM
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttctgaattattagatggtttaaatgacaatcaacgcgaagccgttgccgcc
ccgctacaaaatatgctggtgctggcgggcgcaggttcaggtaaaacccgcgtccttgtc
catcgaattgcttggttaatgcaagttgagcatgcatcgccttacagtatttttgcggta
acctttaccaacaaagcagccaaagaaatgcgcagccgtgttgaagcaacgcttaaggcg
tctgttggcggcatgtggattggtactttccacggcttatcccaccgtattcttcgcgcc
catcataaagaagcaaacctgccagaatcatttcaaattctcgacacagacgatcaagtt
aggatgatccgtcgcttgatgaaagcaatgaatattgacgagaagaaatggccggccaaa
caagctgcttggtatattggcgctaaaaaagacgaaggtttacgtcctaaatatattcaa
gcgtttgaccctaatgaacaaatgatgctgcgtatttacaccgcttaccaagaagcatgt
gaccgtgcaggtttagttgattttgccgaaattttactgcgttgtttcgaattactacgt
gaccaaccaactttacttcgccactaccaacaacgttttccgcatatgctggtagacgaa
ttccaagataccaacaccattcaatatcaatggttaaagttaattgctggtaaaagcaac
aagatcatgattgtgggtgatgatgaccaaagtatttatggctggcgtggcgcgcgtatc
gagaatataaaacagtttattagtgactttgatgcgcaaacaattcgcttagaacaaaac
tatcgttcaacgggtaatattctaaaggcggcaaaccatttaattgccaataactctgaa
cgtatgggtaaagagctgtggactgacggtaatcaaggtgaacaaattggtgtttacgct
gcttataacgaactagacgaagcccgctttattgtaagtaaaattaaggcttggtttgag
caaggtaatgcactgcaagactgcgccattttataccgcaacaacgcccaatcacgtgta
ctggaatcagaattaaatattcaatcaccgcgaattccttaccgaatttacggcggtatg
cgcttcttcgaacgtcaagaaattaaagacgcattatgctacttacgcattgtaaataac
cgcaatgatgacgcggcatttgagcgtattattaacaccccaacgcgcggcattggcgat
cgcacattaagccaaattcgtgactgtgcgcgtagcgaatcattaccactttggtatgca
gcaaaaaccttactcgcagaaaaacacttagcggggcgtgctgccaatgcggttaattca
tttattgaactgatcgatcagattgaagacaatattctcgataaatcactagataaacaa
actaaatacgcgattcaaacatcaggtctaatggcgatgtatatggcagaaaaaggcgag
aaaggccaagcacgcgtagagaacttagaagaattaattaacgctactagccaatacgaa
ctgccagatgaagaagaatttagctcaccccttgatggctttttagcatataccgcgctt
gaatcaggtgaggggcaagcagacgaacacgaagatgcagtgcaaatgatgacactgcac
tctgccaaaggcttagagttccctctggtatttatggcaggcgttgaagaaggcatgttc
ccgtcgcaacaaagccaagaagaaaccggccgtttagaagaagaacgtcgcctgtgctat
gtaggtatgacacgtgccatgcaaaagctttatatttgtcacgctgaaagccgccgttta
tatggacaagaaaagtttcatagcccgtcacgttttattcgcgaattaccggaagattgc
ctagatgaaattcgtattaaaacgcaaattacaaagcctaaaaccacaggccgttttagt
aataccatcagtttagaaacctttaacgatacaggctttaaactcggccagcgtgtaatg
cacggcaagtttggtgaaggtacagtgctaaactatgagggtacgggcccacaggcacgt
attcaagttaactttgatgatcatggtaccaagtggctagtgaccatgtatgcgaaatta
caagcgatgtaa
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