Pseudoalteromonas spongiae: PSPO_a0141
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Entry
PSPO_a0141 CDS
T05098
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pspo
Pseudoalteromonas spongiae
Pathway
pspo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pspo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PSPO_a0141 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspo03021
]
PSPO_a0141 (rpoB)
03400 DNA repair and recombination proteins [BR:
pspo03400
]
PSPO_a0141 (rpoB)
Enzymes [BR:
pspo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PSPO_a0141 (rpoB)
Transcription machinery [BR:
pspo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PSPO_a0141 (rpoB)
DNA repair and recombination proteins [BR:
pspo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PSPO_a0141 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ATC97397
LinkDB
All DBs
Position
I:134283..138308
Genome browser
AA seq
1341 aa
AA seq
DB search
MAYSYSEKKRIRKDFGKRPQVLDVPFLLSTQLESFKKFLSPDAEGNHGLEAAFRSVFPIK
SYSGNSELQYVSYRIGEPVFDVKECQIRGVTYSAPLRVKLRLVLMDKEAPGTVKDIKEQE
VYMGEIPLMTDTGTFVINGTERVIVSQLHRSPGVFFDNDRGKTHSSGKVLYNARVIPYRG
SWLDFEFDPKDNLFVRIDRRRKLPASIILRALEYSTEEILDMFFETTTFEVADGKVLMEL
VPSRLRGETAIFDIKDPSGDVIVESGRRITARHIKQLEKNNVTQLEVPHEYIIDRVVAKN
YINEDTGEIVAEANAELSLELMAELVKAGFNKIETLYINEVDSGAYMSETVRVDPTNDRL
EALVEIYRMMRPGEPPTRDAAEALFDNLFFSEERYDLSQVGRMKFNSRVGHEEGYGAGTL
SKEDIVAVMKVLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLS
LGDLDAVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLSTYARTNDYGFLETPYRKVIDGVVT
DEVDYLSAIEEGQFVIAQANANLTEENRFVDEQIPCRHKGESTFMPSDSIQYMDVSPQQV
ISVAAALIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGIERTLAKDSGVTIVAKR
GGVVDYADASRIVVNVNEDERVPGEAGIDIYNLTKYTRSNQNTCINQKPTCMVGEPVVRG
DVLADGPSTDLGDLALGQNLRVAFMPWNGYNFEDSILLSERVVQEDRLTTIHIQELQCIA
RDTKLGPEEITADIPNVGESALGKLDESGVVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEIEEMQVREAKKDF
NEEFKILEEGVLSRARKLLIAAGMDEASLAGLAADKLLTQSLADEAQQGELEQLAEQYDE
LKADYDKRFETKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISTIV
PVEDMPYDDRGRTVDIVLNPLGVPSRMNIGQILETHMGLAARGIGERLEDMMKEQRELHE
LREFIAKAYALGDCRQKVDIASFSDDEIRRLAENLKGGLPIATPAFDGAKESEIKELLEL
GGYPSSGQVTLYDGRTGDEFERKVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHKMEPGMPE
SFNVLLKEIRSLGINIELEEE
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcttattctgaaaagaaacgtatccgtaaggattttggtaaacgtccacaa
gtgttggatgtgccgtttctactgtctacgcagttagaatcctttaaaaaattcttaagt
ccggacgcagaaggcaatcacggccttgaagcagcattccgttctgttttcccgatcaaa
agttactcgggaaattctgagctacaatacgtaagttatcgtattggtgagccagtattt
gatgttaaagagtgtcaaatccgcggtgtgacttattctgcaccattacgcgttaagcta
cgcttagtgctaatggacaaggaagcaccaggcacagttaaagacattaaagagcaagaa
gtatacatgggcgaaattccgctcatgaccgatacaggtacttttgtgatcaatggtact
gagcgtgtaatcgtttctcagctacatcgttcaccaggtgtattcttcgataatgaccgt
ggtaaaacgcactcatcgggtaaagttttatataatgcacgtgttattccttaccgtggt
tcttggttagatttcgaattcgatccaaaagataacctattcgtacgtatcgaccgtcgt
cgtaaactgccagcgtctattattttacgcgcactagaatattcaactgaagaaattcta
gatatgttcttcgaaactacaacgttcgaagtagcagacggtaaagtattaatggaactt
gttccatcacgtttacgtggtgagactgcgatctttgatattaaagatccttctggtgat
gtgattgttgaatcaggccgtcgtattacggcgcgtcacatcaaacaactagaaaagaac
aacgttactcagctagaagttccgcacgagtacatcattgatcgtgttgtagcgaaaaac
tacatcaacgaagacacaggtgaaattgtagctgaagcaaatgctgagctgtcacttgag
ttaatggctgaacttgttaaagctggctttaacaagattgaaacactgtatatcaacgaa
gttgatagcggtgcatacatgtcagaaactgtacgtgttgacccaacaaatgatcgttta
gaagcgcttgttgaaatctaccgcatgatgcgtcctggtgagccaccaacgcgtgatgca
gcagaagcactattcgataacttattcttctctgaagagcgttacgacctatcacaagtt
ggtcgtatgaaattcaacagccgtgttggccacgaagaaggttacggtgcaggtacacta
agtaaagaagatatcgttgcagttatgaaggttctaatcgacattcgtaacggtaaaggt
gaggttgatgatatcgaccacttaggtaaccgtcgtattcgttctgtgggtgaaatggca
gaaaaccaattccgtgttggtttagtacgtgttgagcgtgcagtacgtgagcgtttaagc
ttaggtgatcttgatgcagtaatgccacaagacctaatcaatgctaagcctatttctgca
gcggttaaagaattcttcggttcatcgcagttatctcagtttatggaccaaaacaacccg
ctttcagaagtaacgcacaagcgtcgtatctctgcattaggtccaggtggtctaacgcgt
gagcgcgcaggcttcgaagtacgtgacgttcacgtaactcactacggtcgtgtatgtcca
atcgaaacgcctgaaggtccgaacatcggtctgatcaactcgctttcaacatacgcacgt
actaacgactatggtttcctagaaacgccataccgtaaagtaattgacggcgttgtaact
gacgaagttgattacctatctgcaatcgaagaaggtcagtttgtaattgcacaggcaaac
gcaaacttaacagaagaaaaccgttttgttgatgagcaaattccatgtcgtcacaaaggt
gaatcaacctttatgcctagcgacagcatccaatatatggatgtatcgccacaacaggtt
atctcagttgcagcagcacttatcccattcctagagcacgatgatgcgaaccgtgcacta
atgggatcgaacatgcaacgtcaagcagtaccaacattacgtgcagataagccgttagta
ggtacaggtatcgagcgtacacttgcgaaagattcaggtgtaacaatcgttgctaagcgt
ggtggtgtagttgattacgctgatgcgagccgtatcgttgtaaacgtaaatgaagatgag
cgcgttccaggtgaagcgggtatcgacatttataacctaactaagtacacacgttctaac
cagaacacctgtatcaaccaaaaaccaacgtgtatggttggtgagccggttgttcgtggc
gacgtacttgctgatggtccttcgacagacttaggtgacttagcactaggtcaaaacctt
cgcgtggcattcatgccatggaatggttataacttcgaggattcaatcttactatcagag
cgcgtagttcaagaagatcgtctaaccacgattcatattcaagaacttcagtgtatcgcg
cgtgataccaagttaggtccagaagaaattacagctgatattcctaacgtaggtgaatct
gcacttggcaaacttgatgaatcgggtgttgtatacatcggtgctgaagttaaaggcggt
gacatcttagttggtaaagttacacctaaaggtgaaacgcagctaactcctgaagaaaag
ctactacgtgctatcttcggtgaaaaagcgtctgacgttaaagacagctcattacgtgta
ccaaactcagtatctggtacagtaatcgacgttcaagtatttactcgcgatggtgttgaa
aaagacaagcgcgcacttgaaatcgaagagatgcaagttcgtgaagcgaagaaagacttc
aacgaagaatttaagatccttgaagaaggtgtcttaagccgtgctcgcaagctacttatt
gctgctggtatggatgaagcatcacttgcaggtcttgctgcagacaagctactaacgcaa
agcctagctgatgaagcacaacaaggcgagttagagcaactagctgaacagtatgatgaa
ttaaaagctgattacgacaagcgcttcgaaactaagcgtcgtaagatcacacaaggtgac
gatttagcaccaggtgttcttaagattgttaaagtttacctagctgttaaacgtcgtatt
caaccgggtgataagatggctggtcgtcacggtaacaaaggtgttatctcgacaatcgta
ccagtagaagatatgccttacgatgaccgtggtcgtaccgtagacatcgttcttaacccg
ctaggtgtaccatcacgtatgaacatcggtcagatcttagaaacacacatgggtctggct
gctcgtggtattggtgagcgcctagaagacatgatgaaagaacagcgtgaacttcacgaa
ttacgtgaattcattgctaaagcttacgcattaggtgactgtcgtcagaaagttgatatt
gcaagcttctctgatgatgaaatccgtcgcttagctgaaaacctaaaaggcggtttacca
atcgcaactccagcgtttgacggtgcaaaagaaagtgaaatcaaagaactacttgagcta
ggtggatacccttcaagtggtcaggtaacactttatgacggtcgtactggtgatgagttt
gagcgtaaagtaactgtaggttacatgtacatgctgaaactaaaccacttagtagatgac
aagatgcacgctcgttcgactggttcttacagcctagtaactcagcagccacttggtggt
aaagctcagttcggtggtcagcgtttcggtgagatggaggtatgggcactagaagcatac
ggtgctgcttacacgctacaagaaatgcttactgttaagtcggatgacgttaacggtcgt
actaagatgtataagaacatcgtagacggaaaccacaagatggaacctggtatgccagaa
tcgttcaacgtattgttgaaagagatccgctcactaggtatcaacatcgagctggaagaa
gaataa
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