Pseudoalteromonas spongiae: PSPO_a0143
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Entry
PSPO_a0143 CDS
T05098
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pspo
Pseudoalteromonas spongiae
Pathway
pspo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pspo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PSPO_a0143 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspo03021
]
PSPO_a0143 (rpoC)
03400 DNA repair and recombination proteins [BR:
pspo03400
]
PSPO_a0143 (rpoC)
Enzymes [BR:
pspo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PSPO_a0143 (rpoC)
Transcription machinery [BR:
pspo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PSPO_a0143 (rpoC)
DNA repair and recombination proteins [BR:
pspo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PSPO_a0143 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ATC97398
LinkDB
All DBs
Position
I:138419..142594
Genome browser
AA seq
1391 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFDAIRIGLASPDMVRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVTEPGMTTLERGQLLGEEEYLDALEEHGDEFEAKM
GAEAVLDLLRDLDLGQLIAEMREELPTINSETKRKKITKRLKLMESFHQSGNNPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LKLHQCGLPKKMALELFKPFIYGKLERRGMATTIKAAKKMVEREVPEVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIHLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDRINANGEGLVFKDAKEAEKAYRTG
VADLHARVKVRLTETVISEEGDKSEITHLVETTVGRAIFSLIMPEGLPFELVNKAMGKKQ
ISGLLNECYRRLGLKDTVVFADQVMYTGFHYAMKSGVSIGINDMEIPPVKAEIIDAAEAE
VNEINQQFQSGLVTAGEKYNKVIDIWSRVNENLSREMMANLSKDTVINAEGVEEEQDSFN
SVFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVINEQDCGTEDGLTMKPLIEGGDVVEPLRERVL
GRVVAEDVLKPGTEEVLVERNVMLDEKLCDLLEENSVDEVRVRSVITCDNDFGVCANCYG
RDLARGHLINPGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKNNGSLKL
HNAKYVLNSDGKIVITSRSTEITVIDEHGREKERYKVPYGAVLSVQDGAEVAGNDIVATW
DPHSHPIIVEHESKVQFSDIDDSNVESQTDELTGLTRMVVKDLAKVNAKEPKLIIENDER
GLQEIRIPSFTTIEVTDGSTAAAGAVLARIPQEGSKTRDITGGLPRVADLFEARKPKDPA
ILAEITGTVSFGKETKGKKRLVITPEQGDAYEEMIPKWRQLNVFEGESVSKGEVIADGPE
SPHDILRLRGVTDVANYIVNEVQEVYRLQGVKINDKHIETIIRQMIRKCIILDGGDTEFL
AGEQVEVARVNIANRELEEQGKIPAKYEIQLMGITKASLATESFISAASFQETTRVLTDA
AVNGKSDELRGLKENVIVGRLIPAGTGFAYHQDRINRRKQGESVEEQTVSVDEASQALTD
ALNAGIEGEQE
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaagcaacaaaacaagaccgaagagtttgatgcgatc
cgcatcggtctagcttcgccagatatggtacgttcatggtcattcggtgaagtaaagaaa
cctgagacaatcaactaccgtactttcaagcctgagcgcgacggcttattctgtgctcgt
attttcggcccagtaaaagactatgagtgtttatgtggtaaatataagcgcttaaagcac
cgtggtgttatttgtgaaaagtgtggcgtagaagttacattaactaaggttcgtcgtgac
cgtatgggtcacatcgagctagctagccctgtagcgcacatttggttccttaaatcatta
ccgtctcgtatcggcctaatgttagacatgacattacgtgatatcgaacgtgtactttac
ttcgaatcattcgtagtaactgaaccgggtatgacaacgcttgagcgtggtcagctatta
ggtgaagaagaatacctagatgcattagaagaacacggtgacgagttcgaagctaagatg
ggtgcagaagctgtacttgatctacttcgtgacctagaccttggtcagctaattgcagaa
atgcgcgaagagttaccaacaattaactctgaaactaagcgtaagaagatcactaagcgt
cttaagctgatggaatcattccaccaatcaggtaacaaccctgagtggatgatcatgact
gtattaccagttcttccaccagatcttcgtccactagtaccactagatggcggtcgtttt
gctacatctgatctgaacgatttataccgtcgtgtaatcaaccgtaacaaccgtctgaag
cgtcttttagacttagctgcaccagacattatcgtacgcaacgaaaagcgtatgttacaa
gaagcggtagatgcactgcttgataacggtcgtcgcggtcgtgcgatcacaggttctaac
aagcgtccacttaagtcgcttgcagacatgatcaaaggtaagcaaggtcgtttccgtcaa
aaccttcttggtaagcgtgttgactactcaggtcgttctgtaatcactgtaggtcctaca
ctgaaactacaccagtgtggtcttcctaagaaaatggcactcgagctattcaagccattt
atctacggtaaattagagcgccgcggtatggcgactactatcaaagctgcgaagaagatg
gtagagcgagaagtaccggaagtttgggatatcctagatgaagtaattcgtgagcacccg
gttctacttaaccgtgcaccaacacttcaccgtcttggtatccaggcgtttgaaccagta
ttaatcgaaggtaaagcgattcacctacacccattagtgtgtgcggcatataacgctgac
ttcgatggtgaccaaatggcggtacacgtaccgttaacattagaagcacagctagaagca
cgtgcgctaatgatgtcaaccaacaacattctttcaccagcgaacggtgagccaatcatc
gtaccttcacaggacgttgtattaggtctttactacatgacacgcgatcgcattaatgcg
aacggtgaaggtttagtattcaaagacgcgaaagaagctgagaaagcataccgcacaggt
gttgctgacttacacgcacgcgttaaagttcgtttaactgaaacggttatcagtgaagaa
ggcgacaagagcgaaattacacacctagttgaaacaacagtaggtcgtgcaattttctca
ctaattatgcctgaaggcttaccatttgaacttgttaacaaggcaatgggtaagaagcag
atttcaggtcttcttaacgagtgttaccgtcgtctaggtctaaaagacacagtagtgttt
gctgaccaagtaatgtacacaggtttccactacgcgatgaagtcgggtgtttctatcggt
attaacgatatggaaatcccaccagttaaagctgaaatcatcgacgcagctgaagcagaa
gttaacgaaatcaaccaacagttccagtctggtcttgtaactgcgggtgaaaagtacaac
aaagttatcgatatctggtcacgtgtaaatgaaaacttatcacgtgaaatgatggcaaac
ttatcaaaagatactgtaatcaacgctgaaggtgttgaggaagagcaagactcattcaac
tcagtatttatgatggccgactcaggtgcacgtggtagcgccgctcagatccgtcagtta
gcgggtatgcgtggtctaatggcacgtccagatggttcaatcatcgaaacaccaatcacg
gcgaacttccgtgaaggtctaaacgtactacagtacttcatctcgacgcacggtgcgcgt
aaaggtcttgccgatacagcacttaagacagcgaactcgggttacctaacgcgtcgtcta
gtagacgttgcacaagacttagtaatcaacgagcaagactgtggtactgaagatggtcta
acaatgaagccactaattgaaggtggtgacgttgttgagccgctacgcgagcgtgtatta
ggtcgtgtagttgctgaagacgtattaaagccaggtactgaagaagtacttgttgagcgt
aacgtaatgcttgacgaaaaactgtgtgaccttctagaagagaactcagtggacgaagta
cgcgtacgttcagttatcacatgtgataacgacttcggtgtatgtgctaattgttacggt
cgtgaccttgcacgtggtcacctaattaacccaggtgaatcagtaggtgttatcgcagct
caatcaatcggtgagccaggtacacagcttacgatgcgtaccttccacatcggtggtgcg
gcatctcgagcgtctgcagagaacagtgtacaagttaagaacaacggtagcttaaagctg
cacaacgctaaatacgttcttaactcagatggtaagattgtaatcacatctcgttcaact
gaaatcacagttatcgatgagcacggtcgtgagaaagagcgttataaagtaccttacggt
gcggttctttcagtacaagatggtgctgaagtagctggtaacgatatcgttgcgacatgg
gatccgcatagtcacccaatcattgttgaacacgaatcaaaagttcagttcagcgacatt
gatgactcaaacgtagaatcgcaaacagacgaactaactggtcttacgcgtatggttgtt
aaagaccttgcgaaagttaacgcgaaagaacctaagttaatcattgaaaatgatgagcgc
ggtcttcaagaaatccgtattccttcattcactactattgaagtgactgatggttcaacg
gctgcggctggtgcagtattagcacgtattccgcaagaaggttcgaagactcgtgatatc
accggtggtctacctcgagttgctgacttatttgaagcgcgtaagccgaaagatccagca
attcttgcagaaatcacaggtactgttagtttcggtaaagaaactaaaggtaagaaacgc
ttagttattacaccagagcaaggtgatgcatacgaagagatgattccgaaatggcgtcag
cttaacgtattcgaaggtgaatcagtatcgaaaggtgaagttatcgccgacggcccagag
tcaccacacgatatccttcgcctacgtggtgtaactgatgttgctaactacatcgtaaac
gaagtacaagaagtataccgtttacaaggtgtaaaaattaacgataagcacatcgaaact
atcattcgtcagatgatccgtaagtgcatcatcctagacggtggtgatacagaattccta
gcaggtgaacaagttgaagtggcgcgcgtaaatatcgcaaaccgtgaacttgaagagcaa
ggtaagatcccagctaaatatgaaattcagctaatgggtattactaaagcatcacttgcg
acagaatcattcatttctgcagcatcattccaggagacaactcgtgttcttactgatgca
gcggtaaatggtaagagcgatgaattacgtggtcttaaagaaaacgtaattgtaggtcgc
ttgattccggcgggtactggttttgcctaccaccaagaccgtatcaatcgtcgcaaacaa
ggtgaaagtgttgaagagcaaacagttagtgtagatgaagcatcacaagcactaactgat
gcacttaatgctggcatcgaaggcgagcaagaataa
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