Pseudoalteromonas spongiae: PSPO_a0326
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Entry
PSPO_a0326 CDS
T05098
Symbol
sbcC
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pspo
Pseudoalteromonas spongiae
Brite
KEGG Orthology (KO) [BR:
pspo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspo03400
]
PSPO_a0326 (sbcC)
DNA repair and recombination proteins [BR:
pspo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PSPO_a0326 (sbcC)
Archaeal homologous recombinant proteins
PSPO_a0326 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
ABC_tran
DUF5082
AAA_21
NTPase_1
Sec2p
Pepsin-I3
SMC_N
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ATC97555
UniProt:
A0A290T0M4
LinkDB
All DBs
Position
I:complement(301995..305666)
Genome browser
AA seq
1223 aa
AA seq
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MKILSLRFANLNSLKGEWKIDFNKAPFAESGIFAITGPTGAGKTTILDAICLALYNSTPR
LGAISASNNEIMTRGTSYCLAEVEFAVNQGVYRAFWSMRRARNKPDGNLQPAEVELVEVA
SNKPIAAQIKKKDQLIESLTGLNFARFTKSMMLSQGQFAAFLQAKEADRAELLEELTGTE
IYGQISQLVHQRFGEARDALNVISAKTESLELLPEERINEINQQFSELQTQQANLKSELT
SLQAKRDWHNQLIQNQQRLEKLQQQKAQLENELAEKQPELTRLETALPAQKLAVDLDKLA
SLNTAKQSQIASIESYQQQANLRANEQAKVVELNYSLATKLDTAKQAQKELFELIDNKVT
PLDNQLAHSKSKLSELNQQLESLYIQKKELTEALQQSESNIQCLETEKQQLAASFDQTIN
IEQFEHQLSEWLDEHAKLQLNAQSLQQQQNQLTELAESKTALNQAIGEQQTGIAKEQTKR
EQRQLQVTQLQTQLSEFGDNSDIDVCENIINSLKQTLDKAKTAKQQQIQWQQITNEIFAD
KTQIKTLQSAQPELEEQLASQNALLKAQQQSLDTSLRLQNAEAQLAQLRQDLEEDTPCPL
CGSAQHDLSHFEAGNSSGDENTQIATLKQEISDLQQNVIELSAALSSNAQQIDALNTAIT
NKTQQLDSIATTWSIEQIAISDETALLTFIEKTEQHLATALQNHEQVKAINTQLTEAQQA
EREISHQIQLLSEKLNSTTEQLQNLTAKEQKLLTTFDEQQKAYTSALTELVYTINKCGYS
CQEDDLANWFNEQKQQLNTLKTQHKKYQHLQQQLALAQQARNHLTQQQMDIAKQQSELKN
QHETTQQKIAEQAHTRHELFGDKSTITEKQQSQAHLEALHTEVKAAETHAQQINSALTKL
NGQLSEKQDQLNDTNVQLSELKTKLTKLLEQTPYATIEAAQQARLPVDEFDKLAELKRQL
DAALTLNSEQINTVENELKTQQAHEFNTLNLNSQQLQSAFDELNETLGQTNQQLGLLSNQ
INENTARQDKLKDLKHELDLLNREYQDWHYLHGLIGSQKGDKFRKFAQGLTLDNLIYLAN
RQLEKLTGRYLLKRKEDQSLEMQIIDLWQGEQVRDTNTLSGGESFLVSLALALALSDLVS
HKVSIDSLFLDEGFGTLDKETLDIALDALDNLNASGKTIGVISHIDAMKERIPVQIKVRK
KSGLGISELDRTYKFDTIASETS
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatattgtcactgcgttttgccaatttaaactcgctaaaaggtgagtggaaaatc
gattttaacaaagcgccatttgccgaaagcggcatttttgctatcaccgggccaactggc
gccggtaaaaccactattttagatgccatttgcttagcactttacaacagcacgccaagg
cttggtgcaatcagcgcaagtaataatgaaataatgacccgaggcaccagttactgttta
gctgaggttgaatttgccgtaaaccaaggtgtgtatcgtgctttttggtcaatgcgccgc
gcccgtaataagccagacggcaacttacaaccagcggaagtagagctagttgaagtggcg
agcaataaacctattgccgcacaaattaaaaagaaagatcagctaatcgagtcactcact
ggccttaactttgcccgcttcacaaaatccatgatgttgtcacaggggcagttcgccgca
tttttacaagccaaagaagccgaccgcgccgaattattagaagaactcacaggcaccgaa
atttatggccaaatttcgcaattagtacaccaacgctttggtgaagcacgcgatgcactt
aatgtaataagtgctaaaacagaatcgctcgaactgttaccagaagagcgtataaatgaa
ataaaccagcaatttagtgagctacaaacacagcaagctaatttaaaaagcgagcttacc
agcctgcaagcaaaacgcgattggcataaccagcttatacaaaaccaacagcgtttagaa
aaactgcaacagcaaaaagcgcaacttgaaaatgaacttgctgaaaaacagccagagcta
acgcgccttgaaactgccttgcccgcacaaaaactcgcggttgatttagataaactcgca
tcgttaaacactgccaagcaaagccaaattgccagtattgaaagttatcaacaacaagca
aacttgcgcgcaaacgagcaagcaaaggtagttgagttaaattattccctagccactaaa
ctcgatactgccaagcaagcgcaaaaagagttatttgagcttattgataataaggtaacc
ccactcgataaccaacttgcgcatagcaaaagcaaattaagcgagttaaatcagcagcta
gaaagcttgtatatacaaaaaaaagaactaactgaagcgctgcaacaaagtgaaagtaac
attcagtgccttgaaactgaaaagcagcaacttgccgcaagttttgatcaaaccataaat
atagagcaatttgaacaccagctttcagagtggcttgatgagcacgctaagctgcaacta
aacgcacagtctttgcagcagcaacaaaaccaactaaccgagttagccgaaagcaaaacc
gctctaaaccaagcaattggcgagcaacaaacaggcatcgcaaaagagcaaacaaaacgt
gaacagcgtcagcttcaagttactcagttacaaacacagttaagtgaatttggtgacaac
agtgatattgatgtgtgtgaaaacataataaactcacttaaacagacgttagataaagcc
aaaactgcaaaacaacagcaaattcagtggcaacaaataacaaacgaaatctttgcggat
aaaacgcaaattaaaacattacagagtgcccagcctgagctagaagagcagcttgcttca
caaaatgcgctgctgaaagctcaacaacaaagtttagatacctcactgcgcttacaaaat
gccgaagcccaattagcacaactgcgacaagatttagaagaagataccccctgcccgctt
tgcggtagtgctcagcatgacttaagtcattttgaggctggtaactcgtcaggtgatgaa
aacacacagatcgcaacgcttaaacaagagataagtgacttacaacaaaacgtgattgag
ctttccgcagcacttagcagtaatgcccaacaaattgatgcattaaataccgcaatcacg
aataaaacccagcaactagattcaatcgccacaacttggtcgattgaacagattgcgatt
agcgatgaaaccgctttgctgacgtttattgagaaaacagagcaacaccttgcaactgcg
ttacaaaaccatgaacaagttaaagcaataaatactcagttaaccgaggcgcaacaagca
gaacgcgagataagccatcaaatacaattactgagtgaaaaacttaatagcactactgag
caattacaaaacctaaccgccaaagagcaaaagctattaacaacctttgatgagcagcaa
aaagcttacacctcagcgcttacagagcttgtatacacaatcaataagtgtggatattcc
tgccaagaagacgatttagccaactggtttaacgaacagaaacagcaattaaatacactt
aaaacacagcataaaaaataccaacatctacaacagcagctcgctctagcacagcaggca
cgcaaccatttaacacagcagcaaatggatattgcaaagcaacaaagtgaattaaaaaat
cagcacgaaaccacacagcagaaaattgccgagcaagcacacacacgccacgagctgttt
ggcgataaatcgaccataactgaaaagcaacaatcacaagcacacttagaggcgcttcac
actgaagtaaaagccgctgaaacacacgcccaacaaattaattctgcgctcaccaagctc
aacggtcagctaagcgaaaaacaagatcaacttaatgataccaatgtgcaattaagtgaa
ctgaaaaccaagctcactaaattactggagcaaaccccttatgcgaccattgaggcggcg
caacaagcacgcttaccagttgatgagtttgataaactagccgagcttaaacgccaatta
gatgctgcacttacacttaatagcgagcaaataaatactgttgaaaatgagttaaaaact
caacaagcacacgaatttaatacgctaaacctaaatagccagcaactacaaagtgccttt
gacgaactaaatgaaacacttggtcaaaccaaccaacaactggggttactgagcaaccaa
attaatgaaaatacagcgcgacaagacaaacttaaagatttaaaacacgagctcgattta
ctaaaccgcgaatatcaagattggcattatttacacggtttaattggctcgcaaaaaggc
gataagtttagaaaatttgcccaagggctaacgcttgataatttgatttaccttgccaat
cgacaacttgaaaagctcactggccgctacctattaaaacgcaaagaagatcagtcgtta
gaaatgcaaattatcgacctttggcaaggcgagcaagtgcgcgataccaacaccctatct
ggcggtgaaagctttttagtgagcctagctttggcgctcgcgctttcagatttggttagt
cataaagtgagtattgactcactgtttctagatgaaggttttggcacacttgataaagaa
accctcgatatcgcccttgatgcgctcgataacctaaatgccagcggcaaaaccattggc
gtaataagccatatcgatgcgatgaaagagcgcataccagtgcaaattaaagtgcgtaaa
aagtcaggtttaggcatcagcgaactcgaccgcacctataagtttgatacaatagccagc
gaaaccagttaa
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integrated database retrieval system
