Pseudoalteromonas spongiae: PSPO_a0327
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Entry
PSPO_a0327 CDS
T05098
Symbol
sbcD
Name
(GenBank) exonuclease SbcD
KO
K03547
DNA repair protein SbcD/Mre11
Organism
pspo
Pseudoalteromonas spongiae
Brite
KEGG Orthology (KO) [BR:
pspo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspo03400
]
PSPO_a0327 (sbcD)
DNA repair and recombination proteins [BR:
pspo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PSPO_a0327 (sbcD)
Archaeal homologous recombinant proteins
PSPO_a0327 (sbcD)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Metallophos_2
UBL_AVO1
Motif
Other DBs
NCBI-ProteinID:
ATC97556
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Position
I:complement(305663..306874)
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AA seq
403 aa
AA seq
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MRIIHTSDWHLGQSFFNQSRQKEHHLLIKWLAEQVKAQQVDAVIIAGDIFDTGTPPSYAR
SLYSELILAMQAADCQLIVTAGNHDSVATLNEIKSLVKALNCHVVSQASENVAEQIVAIT
KAEKTLGYVCAIPFLRSKDIITSHADESIKEKQDNLAKGIYEHFENTFKAAQTLKADQDI
PIIMTGHLTAVGASSSESVRDIYIGHLSGINAHQLPNADYIALGHIHGAQKVGKEGNVFY
SGSPIALSFDELKHAKSVNLVEFEGQNVSQINKLEIPRFQAMQAIKGNLAEIKNALTVFA
EQTETTWLSIEVTTDDYISDLQNTVLDLTKDLPVEVLQLKRARKHVAKLSQQKQENLSEI
TPLEVFEKRISLEEFTTEDDLARKERLTQHFISLLNTAKGAQS
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgcgcattattcacacatctgactggcatcttggccagagcttttttaatcagtctcgg
caaaaagagcaccatttattaatcaaatggctagctgagcaagttaaagcgcagcaagta
gatgcggtgattatcgcaggagatatttttgatactggcacgccaccaagttatgcgcgc
agcctctacagtgaacttattttggcgatgcaagcggcagattgccagctgattgtaacc
gcaggcaatcacgattcggtagctacccttaacgagattaaaagcttagtaaaagcgctt
aactgccatgtggtatcgcaagccagtgaaaatgtagcagagcaaatcgtcgctatcact
aaagcggaaaaaaccttaggttatgtctgtgccattccatttttacgcagtaaagacatt
atcaccagccacgccgacgaaagcataaaagaaaaacaagacaaccttgccaaaggcatt
tacgaacactttgaaaatacctttaaggccgcgcaaacattaaaagcagatcaagatata
ccgataattatgacgggccatttaactgcggtaggcgcatctagctcagagtcagtgcgc
gatatttatatcggccatctgtcaggtataaacgcacatcaactgccaaacgctgattac
atcgcccttggtcatattcacggcgctcaaaaggtcggtaaagaaggtaatgtgttttat
agcggctcgccaatcgcccttagttttgatgaattaaaacacgcaaaatcggtcaacttg
gttgaatttgaagggcaaaatgtgtcgcaaataaacaaacttgaaatcccgcgctttcaa
gcaatgcaagccataaaaggcaacctcgccgaaattaaaaacgcattaaccgtatttgca
gagcaaactgaaacaacctggctgagcattgaagttaccaccgacgactatattagcgac
ctgcaaaataccgtgttagatctcaccaaagacctgcccgtggaagtattacaactaaaa
cgtgcgcgcaaacatgtagctaaacttagccaacaaaagcaagaaaacctgtctgaaata
acccctttagaggtttttgagaaacgtatttcacttgaagagtttacaacagaggacgat
ctagcccgtaaagagcgcctaacccagcactttatttcactgctgaatacggcaaaagga
gcgcagtcatga
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